RNA id: TCONS_00021236


Basic Information

Item Value
RNA id TCONS_00021236
length 3146
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_010851
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33101851 ~ 33105677 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAGGGTCCATTTTGTTGTTAGACGGAGACGAACTGGAGAAGGAGAACATCATCATTCCGCTGTAGCCTCGGTTTTTTACTGAGCTTCACATATCGGGAAATATTTTCTCCATTTACAGCTACAGCTGACAGACGAGACCAAGGGAATACGAAGGGCTTGTTCCATCAAATTCCTGAGGAAGTCGatCTACGGCTTCTAGAGCACCGTGCGCCGAGGTGAATTCATGTTCAACTCGGTTCCACGACAAAACAACGCTCACTGGCACATGAAAACCTCAGATCTTGCTGGACATACATGTGCAGCGAGAAGTAGATCAACTACTTCGAGGACCTGGAGCCCAATTGGCGAGgaaaaattaaaaagtgaaaaGAACCACGCACTCAACTTTTTTACAACAGAGAGGTGACATCCAGTCAAAATATAATGGGAGGTGGTGAGAGATACAACATTCCAGATCGCCCAGCACCCAAGAAGAGCCAGCCGGTTAGCAGGGGCAAACAGAGAAGTAGAGACCAGAATGGAGTGATGCATTCTGCCGCCTCAGGAGCCTTAGGGGTGCCCCATCACCTTCGCAGAGGTGAGAAGGGCACCAGCTATTCTTGGTCTCCTGAGGCGCGGCAGGCCGTGTCTGTAGACAAGAAGAATGGCTCTGTTCGTTTTGCCACACCGTACGATCAGAATTGGGAGTCCCATCTGAACAAACTTTTATCAGCTCAGTGTGGTCAGAACTATGCCGGAGCCAAGTTTAGTGAGCCCCCATCCCCAAGTGTGCTGCCCAAGCCCCCAAGCCACTGGGTGTCTCTTCCCATGGGCGATCATCGTGAGTTGATGACCTTTCAGTTAAAGAGCCTCCTGAAGGTTCAGGCCTAACAAGGTCTCTCACTGCTGCTCTCTTAAGCCAATACATGATAAAGGCTTCACTTTGGCCTTTTGCCTTCTCCTTGAACGCCCCAGCTGCGTAATATATTTTACAGCTATTTTTAGATCTGCATCTTAATAAGATGGTGATGATCATTTGGTAGACAGATGTTCCTCCTAATGTCCGTCAtctaacatatttttttaaacaaagaaacTAGTTATTACGCTGTTGTGGTCTTAAGAAGCGGTCAAGAAGTCTTTGGGGAGCTGTATGCCATGACAAATGATGAACTGGATGTCCTCTTAAACTCATTGCTCTGTTATGctcctgttttgttttgttctttttttgatGGCTGTTTGTGacagtcagattttttttcttcttccgcTAGACCTAGAAATAGATGTCAAGACAAACTCGCGCATCGTTTTTACTTTCCAATATATCTCgcattttgtttttcttgcttGCTGAGGTTTGATGCTCACTTTTGGCTTGAGTTTTAATCAAGCTGGGAGTGCCAGAAACTTCTTGGTGCTAAGCACAGCAGCATCTGTAGCGTAATAGTGCGTACTGCATTTCCGGGTAtctctttttgttttgctttttgggAAGTAAAAGCCACTCGACTTTGTTCTGCAGGGAGACCTAAGCGAACAGAACATGAAGGGGTACAAGCTTAAGTGAAAAGGTCATATGACTAACCTCAAGCTTAATGAGGTGGCACAATGAACCTTGTGCTTTCAACACCTGTACTTTTTTAATGGCGCTGTGCGCATTGCACTATAGGTGTTGAATTCACTATGGTTCTCAAGCTCTATTGCAGCGTTAAACTTTTACTTTTTGCATCCCTTGTGTTATAGCTTAGAAAACTAAGTGTGATTTTTAATGTTTACCAAAGCGACGTAATCAGCTACTTTTTGTTGAAAGCCCCCACCTTGCTTGACCAGATCTGGTTACAAGTGCCATAAATCATTGCGTAAGGCATTAGCGTATATCAAGGTTTTGGGTGacgaatcattttttaaaaaatttcgcTGTACTTTTGGAATGATCACAGAGCAATTATGCGGAGGAGGGTTATGACGTGAGACCGTAGGATGTAAGTTTTCTCTAATCTCGTCTCATAGCCTTGTTTGCTCTGTGATGCATTTTAAATTCCTAAGCATTAAGTTATGAAATGTGTGTATTATGGCACGGGGGAACTGAGAAATCGGGCGCAGGTCCAGTGTGGACATGTTTACatggtttgttttttaaagaaggCAGACTGCCGgcattttacacacatacactgcccTTTCTCACTTGTTGTTATTCTTGCACTGatgttcatttgtgttcaaaCGTTTCAGACAATGTTGCTCTTTCGACTGTGGATATGTGATGAAGCACCCCTTCCCACTTAGTTATGAGTGTGGTGGAAAACTACCTCTCTTGCAGAACGTGATGTTAATAGCTATCTTAAAGACGACAAAACAAAGCTGATGTGTGTAATGGAGCCATGTAAATAatgaaatgtataaaatgttgtaGCATATTGTACATTTGTGCAGGAACATTTGAAACCTGCGGATAAAGTATTTTTTAGTAATAACACTGAATGTAAAGTCACGCTATGGACGTGGCTTGTTTTCAAatgctgaagaaaaaatattttgttaagaaaaaaaaagaaaatgttgccTATAGTGCGTCAGAACCCCTGCACTGTGCGGTTTGTTGCCAGTGATCTTgcacatgatttttattttgtataatgcaCCGTGTAGGGCAGAACGAGCTTTAAGtgcaagtcaaaaaaaaaaaaaagaaaaaaagatttgaaaatTGAAAGggacttttatacattttttttaagttgtctatgcaaatagaaaaaatatttttatttattttttgttctgttatAACAGTTCTTATTTTGCCCTTTATACAGAGTCCATAAAGCAGTGTTGCATTTGCATTGATTCATTGGTCTTTCCTCCGCAGGCCAATGTTTAAAGCAAATGAATGCTGCGTGTTACCTCTGGTAATAACAGATTACatttttagccttttttttttaaagtgaaacaaaataatatatgtgtatttttaaCGAAATGTGTAAAAGTCCTTTTCCTAAATTTGTCCTAAACAATTGGCTTTGAATTTATCCCAACCATGAAAATGTCACTTGAAAAGAAAACTAAGAGCCCTGAAACAATTGGTACGTACTAAAAGATTGTGTTATTTGGTTatctaaaaagaaataaaattcctTCCCTTCCCCCCA

Function

GO:

id name namespace
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-5475 Acts upstream of or within nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Is expressed in nervous system; otic vesicle; and trunk. Orthologous to human PNRC2 (proline rich nuclear receptor coactivator 2).

Ensembl:

ensembl_id ENSDART00000145055

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022194 lncRNA downstream 41798 33040999 ~ 33060053 (-) True XLOC_010849
TCONS_00021229 lncRNA downstream 125935 32888037 ~ 32975916 (-) True XLOC_010848
TCONS_00022193 lncRNA downstream 282086 32753486 ~ 32819765 (-) True XLOC_010847
TCONS_00022192 lncRNA downstream 282277 32753486 ~ 32819574 (-) False XLOC_010847
TCONS_00022191 lncRNA downstream 282321 32753486 ~ 32819530 (-) False XLOC_010847
TCONS_00022195 lncRNA upstream 455186 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA upstream 461320 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021241 lncRNA upstream 477191 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00021242 lncRNA upstream 477191 33582868 ~ 33592106 (-) False XLOC_010853
TCONS_00022196 lncRNA upstream 482138 33587815 ~ 33592580 (-) True XLOC_010853
TCONS_00021233 mRNA downstream 4453 33062570 ~ 33097398 (-) False XLOC_010850
TCONS_00021234 mRNA downstream 6690 33062856 ~ 33095161 (-) False XLOC_010850
TCONS_00021235 mRNA downstream 25087 33069719 ~ 33076764 (-) True XLOC_010850
TCONS_00021230 mRNA downstream 42582 33005688 ~ 33059269 (-) False XLOC_010849
TCONS_00021232 mRNA downstream 42605 33008061 ~ 33059246 (-) False XLOC_010849
TCONS_00021243 mRNA upstream 540044 33645721 ~ 33650578 (-) True XLOC_010854
TCONS_00021245 mRNA upstream 667225 33772902 ~ 33816082 (-) False XLOC_010857
TCONS_00021246 mRNA upstream 667970 33773647 ~ 33817828 (-) False XLOC_010857
TCONS_00021247 mRNA upstream 667974 33773651 ~ 33806390 (-) True XLOC_010857
TCONS_00021248 mRNA upstream 820066 33925743 ~ 33930076 (-) False XLOC_010858
TCONS_00021210 other downstream 452047 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 527615 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 897422 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 938056 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 982248 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021239 other upstream 410089 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 644390 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 1194602 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 1196500 34302177 ~ 34305977 (-) True XLOC_010862
TCONS_00021259 other upstream 1246268 34351945 ~ 34352061 (-) True XLOC_010864

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU162689 False 1895 lncRNA 0.43 2 CI01000027 10040906 ~ 10042949 (+)
rainbow trout (Oncorhynchus mykiss) TU158919 True 3217 TUCP 0.34 5 NC_048566.1 36844933 ~ 36849345 (-)
bowfin (Amia calva) TU114975 True 401 lncRNA 0.31 1 CM030131.1 17161245 ~ 17161645 (-)
tiger barb (Puntius tetrazona) TU162689 False 554 lncRNA 0.62 2 NC_056714.1 5809971 ~ 5812521 (-)
mexican tetra (Astyanax mexicanus) TU114975 False 3278 TUCP 0.42 4 NC_035905.1 32436232 ~ 32441316 (+)