RNA id: TCONS_00001780


Basic Information

Item Value
RNA id TCONS_00001780
length 1154
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_001121
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16673841 ~ 16689023 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCACAGAAAGCCTGTTGCAGAAAAACGTTTTCCGGTTGTTAATAACAACACACAAACGTTTTGATTTAGTGTTGGGTCTGTGTGTGATCATGGCAGAGTACACACATGTAAAATCCACCAAACTGGTCCTGAAAGGTTCAAACGATAAaaagaagaaaaagaacaaaGACAAGAAGAGGAAACGAGATGATGGAGAAGACAAGCTGGATATTGTTGGAGGGTGGTGGACGGTGAAGTGCTTCGGTGAGGTCACAGGCACAGTGGCCATTGAGATGCACAAAAACTCCTACATTCATGCACTGGACACTGGACTCTTCACTGTAGGATCTCCACATAAAGAGGATGAAGGTCCAGATCCTCCTGAACAGTTCACAGCTATAAAACTCTCAGATTCCAGGATAGCACTGAAGTCAGGGTATGGGAAGTATTTGGGTATAAACTCAGAGGGAGTTGTTGTTGGCCGATCAGATGCCATAGGCTCCAGAGAGCAGTGGGAACCAGTGTTTCAAAATGGTAAAATGGCCTTGCTTGCTGCAAACAGTTGTTTCATCTCGTACAGTGAGAGCGGAGACATCGTGGCCAAAAACAAGACAGCTGGAGAGGAGGAAATGATCAAGATCCGTTCATGCACAGAAAGGGAGGTGAAGAGGAAAGATGATATTGCAGATGAAGACCGAGGCGATGTCAAGAACTGCGAGCTCAATTATGTAAAGAAGTTCCAGAGTTTTCAGGACCGGAAGCTGAGGCTGAATGAGGAAGACAGCGGTTCACTCAAAAAAGCCAGAACAGATGGAAAGTTCCATGAGGCACTGCTGGACAGgaGGTCAAAGATGAAGGCTGACAGATACTGCAAGTGAAACCAGAAGAAGCACATCATCATTTTTACATCTTCATGGAATTGacattttaatttcacaattttaacTTTATTCTTGCAAATGCAAGTTACAAACTCAAGCAATTCTGGCTGTTTTCTTCATATTTGTCAGATACAGACTTCtcaagcccaaaattattcatacaccTGGTCAATTTTGACTTAGTTACTTAAAGaaatatttgtacttaaagaaatgtatttttttttccatgatgGAAAtgaatgatgcctcttgtacatcgtaTTATCTTTGGAGAAGCCTGTgtcacttt

Function

GO:

id name namespace
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0055120 striated muscle dense body cellular_component
GO:0005730 nucleolus cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050417-324 Predicted to enable actin filament binding activity. Predicted to act upstream of or within muscle organ development. Predicted to be located in Cajal body. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleolus and striated muscle dense body. Orthologous to human FRG1 (FSHD region gene 1).

Ensembl:

ensembl_id ENSDART00000079001

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003378 lncRNA downstream 3928 16669825 ~ 16671336 (-) True XLOC_001120
TCONS_00001778 lncRNA downstream 17411 16655702 ~ 16657853 (-) True XLOC_001119
TCONS_00001776 lncRNA downstream 167481 16506703 ~ 16507783 (-) True XLOC_001118
TCONS_00003377 lncRNA downstream 191362 16482924 ~ 16483902 (-) True XLOC_001117
TCONS_00001774 lncRNA downstream 213866 16460121 ~ 16461398 (-) True XLOC_001116
TCONS_00003379 lncRNA upstream 641301 17330266 ~ 17361201 (-) False XLOC_001129
TCONS_00002936 lncRNA upstream 641301 17330266 ~ 17361278 (-) False XLOC_001129
TCONS_00001791 lncRNA upstream 641301 17330266 ~ 17361278 (-) True XLOC_001129
TCONS_00001800 lncRNA upstream 983795 17672760 ~ 17674970 (-) True XLOC_001134
TCONS_00003380 lncRNA upstream 1190467 17879432 ~ 17885732 (-) True XLOC_001140
TCONS_00001777 mRNA downstream 10220 16654254 ~ 16665044 (-) False XLOC_001119
TCONS_00001775 mRNA downstream 167452 16484211 ~ 16507812 (-) False XLOC_001118
TCONS_00001773 mRNA downstream 280450 16393077 ~ 16394814 (-) True XLOC_001114
TCONS_00001772 mRNA downstream 877601 15623961 ~ 15797663 (-) True XLOC_001111
TCONS_00001768 mRNA downstream 1345987 15293531 ~ 15329277 (-) True XLOC_001108
TCONS_00001793 mRNA upstream 848486 17537451 ~ 17587552 (-) False XLOC_001131
TCONS_00001794 mRNA upstream 849966 17538931 ~ 17569793 (-) False XLOC_001131
TCONS_00001796 mRNA upstream 866979 17555944 ~ 17570013 (-) True XLOC_001131
TCONS_00001797 mRNA upstream 929050 17618015 ~ 17650223 (-) True XLOC_001132
TCONS_00001798 mRNA upstream 963423 17652388 ~ 17663108 (-) True XLOC_001133
TCONS_00001766 other downstream 2026195 14648999 ~ 14649069 (-) True XLOC_001103
TCONS_00001765 other downstream 2035588 14639582 ~ 14639676 (-) True XLOC_001102
TCONS_00001762 other downstream 2081466 14593705 ~ 14593798 (-) True XLOC_001101
TCONS_00001760 other downstream 2114779 14560391 ~ 14560485 (-) True XLOC_001098
TCONS_00001759 other downstream 2121949 14553221 ~ 14553315 (-) True XLOC_001097
TCONS_00001784 other upstream 238759 16927724 ~ 16927939 (-) True XLOC_001122
TCONS_00001785 other upstream 241191 16930156 ~ 16930372 (-) True XLOC_001123
TCONS_00001786 other upstream 243621 16932586 ~ 16932801 (-) True XLOC_001124
TCONS_00001787 other upstream 246430 16935395 ~ 16935611 (-) True XLOC_001125
TCONS_00001788 other upstream 248452 16937417 ~ 16937633 (-) True XLOC_001126

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_05345787_05353985.mRNA True 718 mRNA 0.44 7 CI01000300 5345710 ~ 5353985 (-)
bowfin (Amia calva) AMCG00015844 True 726 mRNA 0.45 8 CM030132.1 24605666 ~ 24618170 (-)