RNA id: TCONS_00000194


Basic Information

Item Value
RNA id TCONS_00000194
length 1791
RNA type mRNA
GC content 0.50
exon number 11
gene id XLOC_000102
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8601935 ~ 8610564 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGGCGGGAGCCTCGAGAGAGAATGAAGGAGCAGAAAACCAGCATCCTCAGCTAATAACACCGACCGAAATCAACACCCTGGCTTATAATTAAAATCATTCGCTTGTGAGGGAGTGAATGACATTGGCACATCAGTCATGTATTCTGAGGAGTGGAGCAGGAATCGGCAGGGTAGAGAGAAGACTGTGATCACGAATTTCAGTTTTAGTCAGCTGCCAGAGGAGGAGAAGACGGGTAGGAGAAAACCTCACAGTGCTCATGACTCTGACGAATCCATTCCAGATGATCGATACCATAGCATCTACTTTGCCATGCTGCTGGCTGGTGTGGGCTTTCTACTGCCATACAACAGCTTTATCACTGATGTGGATTATCTCCATCGTAAATTCAAAGGCACCTCTATTGTGTTCGACATGAGTTTGACGTACATACTGGTGGCTCTCAGCGCTGTCATCGTGAACAACGCGCTGGTGGAGAGACTGAGTTTACATACTCGCATCTGTGTggGATACCTGTTTGCGTTGGGACCtttggtgtgtgtgagtgtatttgaCGTCTGGTTGGAGCTGTTCAACACTCAGCAGTCCTATGCTGTTACTCTGGCTGCGGTTGCCATTGTTGCATTTGGATGCACAGTGCAGCAGTCCAGTTTCTATGGTTACACAGGGATGCTGCCCAAGAGATACACGCAGGGTGTGATGACTGGAGAGAGCACTGCAGGAGTTATTGTTTCTCTGAGCCGGATTTTTACAAAGCTGCTGGTGGAGGATGAGAAGAACAACACTATTATCTTCTTCCTGTTCTCCGTCTCAATGGAGACGCTCTGTTTTCTGCTTCATGTGGTGGTTCGCCGAACACACTTTGTCCGTTATCACACCAGCAGAGCTCGCCAGAGCCACAGCTGGCTCAAAGGACAGATTAATAACGTTACGACACAAAAGCACAGCGGCTATCAGATACATTACGACAGCAGTGCAGAGGAAGAGGATGGAATGGCGTCAAGCATGGTTGACGATGCTGATGCGGTTAATCTGGGTAACGGTTCCCATGGAGATGGCATATACGTCAGATTCGATGTGCCTAAACCAGAAGCCAAAAGGAGCTGGATCAGTGTGAAGGAGCTGCTGGGTCGGAGGTGTGCTGTAGCCCGGGTGATCTGGCCATATATGCTTTCAATCTTGGTGACATATttcatcactctgtgtctgttcccTGGTTTGGAGTCAGAGTTGCACAACGATACACTGGGAGAATGGCTGCCTATCCTCACCATGGCTCTGTTCAACATGGCTGACTTTGTGGGCAAGATCTTGGCGGCGTGCCCATACGAGTGGGGTGGTGTGCAGCTGCTGGTGTGTTCGTGTTTGCGCGTTCTCTTCTTGCCCCTGTTTGTGATGTGTGTGTCGCCTGtgcagcgccccctgctggcacACCCTGCCTGGCCCTGCGGCCTGTCTGTGATGCTAGGTATCAGTAACGGATATCTTGGCTCTGTACCAATGATACAGGCAGCTGGCAAAGTGCCACTTCAGCAGCGAGAGGTGGCAGGAAACACCATGACTGTGTCGTACATGGCTGGACTGATGCTAGGGTCTGCAGTGTCTTACTCAACATACAGTCTGACCTCACAGGCACACTCCTCTCACACCACGCTGAAACTCAACAGCACACTCACGTTGCACAACTATATGCCTGGCCACTGAGGAGAATCCAGCACACATGAACATTGGTTTGTACAGGTGATGATTATGTAggactaaaaaaaaacatttccgaAGGCTATCCTGCT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:1901642 nucleoside transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008504 monoamine transmembrane transporter activity molecular_function
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070112-1932 Predicted to enable monoamine transmembrane transporter activity. Predicted to act upstream of or within nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC29A4 (solute carrier family 29 member 4).

Ensembl:

ensembl_id ENSDART00000152367

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000192 lncRNA upstream 11299 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA upstream 11299 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA upstream 11299 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000190 lncRNA upstream 24661 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00003026 lncRNA upstream 26878 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000197 lncRNA downstream 83727 8694291 ~ 8699111 (+) True XLOC_000104
TCONS_00003029 lncRNA downstream 340310 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000198 lncRNA downstream 340310 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00003030 lncRNA downstream 350440 8961004 ~ 8965939 (+) True XLOC_000105
TCONS_00003031 lncRNA downstream 356915 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00000193 mRNA upstream 4920 8593560 ~ 8597015 (+) True XLOC_000101
TCONS_00000191 mRNA upstream 15869 8579197 ~ 8586066 (+) True XLOC_000099
TCONS_00000189 mRNA upstream 61885 8534698 ~ 8540050 (+) True XLOC_000096
TCONS_00000187 mRNA upstream 69926 8521323 ~ 8532009 (+) False XLOC_000095
TCONS_00000186 mRNA upstream 69928 8521323 ~ 8532007 (+) False XLOC_000095
TCONS_00000195 mRNA downstream 51966 8662530 ~ 8670486 (+) True XLOC_000103
TCONS_00000196 mRNA downstream 83632 8694196 ~ 8702684 (+) False XLOC_000104
TCONS_00000199 mRNA downstream 373504 8984068 ~ 8988504 (+) False XLOC_000107
TCONS_00000200 mRNA downstream 375574 8986138 ~ 8988504 (+) True XLOC_000107
TCONS_00000201 mRNA downstream 394155 9004719 ~ 9064912 (+) False XLOC_000108
TCONS_00000154 other upstream 1537992 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1814131 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2416403 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 3099851 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 3151491 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 543530 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 544429 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 608084 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1441210 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1441220 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00422911_00432735.mRNA True 1812 mRNA 0.46 10 CI01000300 422591 ~ 432772 (+)