RNA id: TCONS_00023389


Basic Information

Item Value
RNA id TCONS_00023389
length 5295
RNA type mRNA
GC content 0.60
exon number 26
gene id XLOC_011822
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 918005 ~ 945883 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGACAGCGGCGGGGGAGAGGACGGCGGCGGCGGGATGGAGGTCTCCGCGGCCGTGCAGACGGTAGCGGACGTGTCGGTGCTGCAGAAGCACATCCGAAAGCTGGTGCCGCTGCTGCTGGAAGATGGCGCCGACCCACCCGCGTCTCTAGAGAGCGCGCTGGAGGAGAAGAGCGCCCTGGAGCAGATGAGGAAGTTCCTGTCAGACCCGCAGATTCACTCAATTCTGGTGGAGCGGAGCGCTCTGAAAGagGATGTGGGTGATGAAGGAGAGGAGGAGCGCGAGTGTATTTCCTACAGCGTCAGCATCGACATCCATTACGGCCTCAAGTCCAACAGCCTGGCCCTGATCAAGCGCACGGGTGTGATCGACGCAGATAAGCCCATCTCCACACAGGTGCGTGTGCTGACTCTGAGCGAAGACTCTCCGTACGAGACGCTGCACTCCTTCATCAGCAATGCGGTCGCTCCGTACTTCAAATCCTACATCCGGGAGTCCGGCAAAGCAGACAGGGATGGGGATAAAATGGCTCCGTCAGTGGAGAAGAAGATTGCGGAGCTGGAGATGGGGTTACTGCACCTCCAGCAGAACATCGAGATCCCTGAGATCAGCCTGCTCATCCACCCCATCATCAGCAACGTGGCCAAGCAGTGCTACGAGCGCGGAGAGAAGCCCAAGGTCACCGACTTCGGGGATAAAGTGGAGGATCCCACATTCCTGAACCAGCTGCAGTCCGGAGTCAACCGCTGGATCCGGGAGATACAGAAGGTAACCAAACTGGACCGAGACCCAGCCTCCGGGACGGCCCTGCAGGAAATCAGCTTCTGGCTGAACTTGGAGCGAGCCCTGAACCGCATCCAGGAGAAGAGGGAGAGCCCGGAGGTGCTGCTGACGCTGGACATCCTGAAGCATGGCAAACGCTTCCATGCCACCGTCAGCTTCGACACGGAcaccgGGCTGAAGCAGGCTGTGGAGACGGTGAACGACTATAATCCTCTGATGAAGGATTTCCCGCTCAATGATCTGCTGTCGGCCACTGAGCTGGATAAGATCCGGCAGGCTCTGGTGGCCATCTTCACTCACCTGCGCAAGATCCGCAACACCAAATACCCCATCCAGCGGGCGCTGCGTCTGGTGGAGGCCATCTCCAGAGACCTGAGCTCTCAGCTGCTGAAAGTGCTGGGCACGCGCAAGCTCATGCATGTGGCCTACGAGGAGTTCGAGAAgGTGATGGTGGCCTGCTTCGAGGTCTTCCAGACGTGGGAGGATGAGTACGAGAAGCTGCAGGTTCTGCTGAGGGACATCGTGAAGAGGAAGCGGGAGGAGAACCTGAAGATGGTGTGGCGTCTCAGTCCAGCTCACCGTAAGCTGCAGGCCCGTCTGGACCACATGCGGCGCTTCAGACGGCAGCACGAGCAGCTGCGGGCCGTCATCGTGCGCGTGCTCAGaccacagGTGTCCGCCGTACCGCAGCACGCCCAGGGTGAGAGCGCGGAGCCGGCCGATCTGAAGGTGGCGGAGGTGCTGTTCGATGCTGCAGACGCCAACGCCATCGAGGAGGTGAACCTGGCCTACGAGAACGTGAAGGAGGTGGACGGGCTGGACGTCTCCAAGGAGGGCATGGAGGCGTGGGAGGCAGCCATGAAGCGATACGACGAGCGCATCGACCGCGTGGAGACGCGCATCACCGCACGCCTCCGTGACCAGCTGGGCACCGCCAAAAACGCTAACGAGATGTTCCGCATCTTCTCCCGCTTCAACGCCCTGTTCGTGCGGCCGCACATCCGCGGGGCCATCCGGGAGTACCAGACTCAGCTGATCCAGCGGGTCAAAGACGACATCGAGTCCCTGCACGACAAGTTCAAGGTGCAGTACCCGCAGAGCCAGTCCTGCAAGATGAGCCACGTGCGGGACCTGCCGCCGGTGTCCGGATCCATCATCTGGGCCAAGCAGATCGACCGGCAGCTGACGGCCTACATGAAGCGGGTGGAGGACGTGCTGGGCAAGGGCTGGGAGAACCACGTGGAGGGCCTGAAGCTCAAGCAGGACGGGGACAGCTTCCGGGCCAAGCTTAACACGCAGGAGATCTTCGACGACTGGGCCCGGAAGGTGCAGCAGCGTAACCTGGGCGTCTCCGGCCGCATCTTCACCATCGAGAACACGCGGGCGCGCGGACGCACCGGCACCGTGCTCAAACTCAAGGTCAACTTCCTGCCCGAGATCATCACGCTCTCCAAGGAGGTGCGCAACCTGAAGTGGCTGAGCTTCCGCGTGCCGCTCGCCATCGTCAACAAGGCGCATCAGGCCAACCAGCTGTACCCGTTCGCCATCTCGCTGATCGAGAGCGTGCGCACCTACGAGCGCACCTGTGAGAAGGTGGAGGAGCGCGTCTCCATCTCGCTGCTGGTGGCCGGCCTGAAGAAGGAGGTGCAGGCGCTTATCACTGAGGGCATCTCGCTGGTCTGGGAGTCCTACAAGCTGGACCCGTACGTGCAGCGGCTCGCCGAAACCGTCTTCAACTTCCAGGAGAAGGTGGATGATCTGCTCCTGATCGAGGAGAAGATTGATCTGGAGGTCCGCTCTCTGGAGACCTGCATGTATGAGCACAAGATGTTCACCGAGATCCTGAACCGCATCCAGAAGGCCGTGGATGACCTTAACCTGCACTCCTACTCCAACCTACCCATCTGGGTCAACAAGCTGGACATCGAGATCGAGCGCATCCTGGGTGTGCGTCTGCAGGCGGGACTCAAGGCCTGGACGCAGGTTCTCAGGGGCCAGATGGAGGACAAGGCTGATGTGGACATGGACACCGAGGCTCCTCAAGTCAGCCACAAACCCGGAGGAGAGCCCCGGATTAAGAACATCATCCACGAGCTGCGCATCACCAACCAGGTGATCTACCTGAACCCGCCCATCGAAGACTGCCGCTACCGGCTCTACCAGGAGATGTTTGCATGGAAGATGAACATCCTGTCCTTACCCAGAATCCAGAGTCAGAGatatcagGTGGGCGTCCACTATGAGCTGTCAGAGGAGGAGAAGTTCTACAGGAACGCTCTGACCCGGATGCCCGATGGCCCGTCCGCTCTGGAGGAGGCCTATAATGCAGTCAAGGAGAACGTGTCTGAGGTGGAGCAGTACGTCAAGGTGTGGCTGCAGTACCAGTGTCTGTGGGACATGCAGCCTGAGAACATCTACAACCGGCTGGAGGAAGACCTGAACAAGTGGCAGGCGCTGCTGGTGCAGATCCGCAAGGCCCGCGGCACCTTCGACAACGCAGAGACCAGGAAGGAGTTCGGGCCCGTCATCATCGACTACGGCAAGGTCCAGTCTAAAGTGAACCTGAAGTACGACTCGTGGCATAAGGAGGTGCTGAGCCGCTTTGGGCAGATGCTGGGAAACAACATGCAGGACTTCCACTCGCAGATCTCCAAGTCTCGGCAAGAGCTGGAGCAGCACTCGGTGGACACGGCCAGCACGTCTGACGCCGTCACCTTCATCACGTACGTGCAGACGCTTAAACGCAAGATCAAGCAGTTCGAGAAGCAAGTGGACCTCTTCCGCAACGGCCAGCGTCTGCTGGAGAAGCAGCGGTTCCAGTTCCCTCCATCCTGGCTGTACATCGACAACATCGAGGGCGAGTGGGGCGCCTTCAGCGACATCATGAAGCGCAAAGACACGGCCATCCAGCAGCAGGTGGCCAACCTCCAGATGAAGATCGTGCAGGAGGACCGCGCCGTGGAGAACCGCACCACCGACCTGCTGGCCGACTGGGAGAAGACCAAACCTGTGGCTgggaGTCTGCGGCCAGAGGAGGCGTTGCAGTCGCTCACCATCTATGAAGGAAAGTTCGGCCGTCTGAAGGATGACAGAGAGAAGTGTGCCAAGGCCAAAGAGGCTCTGGAGCTGACGGACACGGGCCTGCCCAGCAGCAGCGAGGAGAGAGTACAGcaggtggcTCTGGAGGAGCTGCAGGACCTGAAGGGTGTGTGGTCGGAGCTGTCGAAGGTGTGGGAGCAGATCGACCAGATGAAGGAGCAGCCGTGGGTCTCTGTGCAGCCGCGCAAGcTCCGCCAGAGTCTGGACGGACTCCTCAACCAGCTGAAGAACTTCCCGGCGCGGCTGCGTCAGTACGCCTCCTATGAGTACGTGCAGCGGCTGCTGAAGGGCTACATGAAGGTCAACATGCTGGTGATCGAGCTGAAGTCGGAGGCGCTGAAGGACCGGCACTGGAAGCAGCTGATGAAGCGTCTGCACGTCAACTGGGTGCTGTCCGAGCTCAGCCTGGGCCAGATCTGGGACGTGGACCTGCAGAAGAACGAGATGGTGGTGAAGGACGTGCTGCTGGTGGCGCAGGGAGAGATGGCGCTCGAGGAGTTCCTCAAACaggtgctgcacacacacacNNNNNNNGAGCTGGACCTGGTCAACTACCAGAACAAGTGTCGCCTGATCCGCGGCTGGGACGATCTGTTCAACAAGGTGAAGGAGCACATCAACAGCGTGTCGGCCATGAAGCTGTCGCCATACTATAAggtgtttgAGGAGGACGCTCTGAGCTGGGAGGACAAGCTGAACCGCATCATGGCGCTGTTCGACGTGTGGATCGATGTGCAGCGCCGCTGGGTTTACCTGGAGGGCATCTTCACAGGAAGTGCAGACATCAAACACCTGCTGCCTGTGGAGACGCAGCGCttccagagCATCAGCACAGAGTTCCTGGCTCTGATGAAGAAGGTGACCAAGTCTCCGCTGGTGATGGACGTGCTGAACATCCAGGGGGTTCAGAGGTCTCTGGAGAGACTGGCGGATCTGCTGGGGAAGATCCAGAAGGCTCTGGGGGAGTATCTGGAGAGAGAGCGCTCGTCCTTCCCCAGGTTCTACTTTGTGGGTGATGAAGATCTGCTGGAGATCATCGGCAACAGCAAGAACGTGGCCAAACTGCAGAAGCACTTCAAGAAGATGTTTGCAGGCGTCTCCAGCATCCTGCTGAACGAGGACAACACTGAGGTGCTGGGCATCTCGTCCCGCGAGGGAGAGGAGGTGCTGTACAAGACGGCGGTCTCCATCACTGAGCACCCCAAGATCAACGAGTGGCTGACGCTGGTGGAGCGCGAGATGCGGGTGACGCTGGCCAAGCTGCTGGCGGAGTCGGTGACGGAGGTGGGCGGATTCAACAAGGGCACGGGCATCGACCTGACCACCTACATCAGCTGGATCGACCGCTACCAGgcccaGCTGGTGGTTCTGTCCACCCAGATCGACTGGTCTGAGAATGTGGAGAGCGCT

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0042552 myelination biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0022010 central nervous system myelination biological_process
GO:0030286 dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7050 Predicted to enable ATP binding activity and minus-end-directed microtubule motor activity. Acts upstream of or within with a positive effect on regulation of cell activation and regulation of microtubule cytoskeleton organization. Acts upstream of or within camera-type eye photoreceptor cell differentiation and central nervous system myelination. Predicted to be located in cytoplasm and microtubule. Predicted to be part of dynein complex. Is expressed in eye photoreceptor cell; photoreceptor outer segment layer; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2O; autosomal dominant non-syndromic intellectual disability 13; and spinal muscular atrophy with lower extremity predominance 1. Orthologous to human DYNC1H1 (dynein cytoplasmic 1 heavy chain 1).

Ensembl:

ensembl_id ENSDART00000158837

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023387 lncRNA downstream 103262 811182 ~ 814743 (-) True XLOC_011820
TCONS_00024513 lncRNA downstream 125866 756769 ~ 792139 (-) True XLOC_011818
TCONS_00024514 lncRNA downstream 137988 779260 ~ 780017 (-) True XLOC_011819
TCONS_00024808 lncRNA downstream 495035 422064 ~ 422970 (-) True XLOC_011811
TCONS_00024807 lncRNA downstream 535564 378483 ~ 382441 (-) True XLOC_011810
TCONS_00024515 lncRNA upstream 911810 1857693 ~ 1874223 (-) True XLOC_011827
TCONS_00024516 lncRNA upstream 929777 1875660 ~ 1880545 (-) False XLOC_011828
TCONS_00024517 lncRNA upstream 931755 1877638 ~ 1878491 (-) False XLOC_011828
TCONS_00024518 lncRNA upstream 931755 1877638 ~ 1879380 (-) True XLOC_011828
TCONS_00023395 lncRNA upstream 969905 1915788 ~ 1924891 (-) True XLOC_011829
TCONS_00023388 mRNA downstream 50001 856681 ~ 868004 (-) True XLOC_011821
TCONS_00023386 mRNA downstream 166922 741424 ~ 751083 (-) True XLOC_011817
TCONS_00023385 mRNA downstream 182468 734133 ~ 735537 (-) True XLOC_011816
TCONS_00023384 mRNA downstream 195787 706630 ~ 722218 (-) True XLOC_011815
TCONS_00023383 mRNA downstream 236863 660126 ~ 681142 (-) True XLOC_011814
TCONS_00023390 mRNA upstream 128620 1074503 ~ 1174960 (-) True XLOC_011823
TCONS_00023391 mRNA upstream 447239 1393122 ~ 1407593 (-) False XLOC_011824
TCONS_00023392 mRNA upstream 447239 1393122 ~ 1407725 (-) True XLOC_011824
TCONS_00023393 mRNA upstream 718749 1664632 ~ 1703259 (-) True XLOC_011825
TCONS_00023394 mRNA upstream 758559 1704442 ~ 1705013 (-) True XLOC_011826
TCONS_00023378 other downstream 712695 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023401 other upstream 1219773 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023424 other upstream 2345457 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 4297457 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 4725035 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 5017092 5962975 ~ 5963065 (-) True XLOC_011866

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000060_00057848_00094445.mRNA True 14556 mRNA 0.57 78 CI01000060 57610 ~ 94804 (-)
bowfin (Amia calva) AMCG00000376 True 14454 mRNA 0.56 78 CM030141.1 12790380 ~ 12824958 (+)