RNA id: TCONS_00023386


Basic Information

Item Value
RNA id TCONS_00023386
length 3160
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_011817
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 741424 ~ 751083 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgtgtgtgtgtgtgcaggtgcaaGTCTGGCTGGCGAGGCgcagtgtgtgatcagtgtgttCCCTCAGCTGACTGTGTTCACGGCTGGTGTGAATCTCCCGGCGAGTGTATCTGTGAGTCCGGCTGGAGCGGCGCGCGCTGCGATCGAGATGTTCGTCCGTGTTCATCGCAGCCCTGCTCTGCAGACTCCAGATGTGTGGACGCTGCAGGAGGACGAGGACACGTCTGCATCTGCACTGCTACACACTGCCGCACGGAGGAGACACACTGCACAGTCAACGGATCTCTCTGCCAGAATGGAGGCTCCTGTGTGTCCAGTAGCTCCTCCTTCAACACATCTAGCTCCTCCTCCAACACTAGCTCCTCCCCCAGCTCCTCTAGCTCCTCCTCCTGCCTCTGTCCGGCTGGGTTCACTGGTTCTCTCTGTGAGCTCCAGTCTGCCGTGTGTaagtccagtgtgtgtgtgaatggcgGGCGATGCGTCCGGCGTGGTCTCTCCTAcaggtgtgtgtgcgcgcgccgctTCAGCGGGTCATCGTGCGAGCGACACAGGCCCAGAGTAAAAGCGCCACAGCAGCACCACACAGCACTCCACAAGCCGCTGGAGACCCCCGGCGCTCTGGCGTCCCGCAGTCAGCTCATCTGCTTCTCCGTCCTGGCTCTCCTCACGGTCCTCGTGGTCCTGGGCTCCACCGCTATCGTCTTCTTCCAGCGCTGCGAGGTCTGGATGGCCAACGTGAGGTACAGGCAGCTGGTGGCGCAGCAGAGGGAGCTGATCCAGGACCAGGCCACCGTGAACATCATCCTGCCTGAGAAGATCAAGCTGAGCAGCTACAGCAGACACTACACCTCCATCTGACCCGCGGCAGGACTGcagccacacacacactgtgggACGACTACACTACCTGTTCATGTGTACAGAGACTGAAACACAGCACAGTCCAACAGAACGCTGAAATCACTGGAGTCATTTATAGCAGACACTGCAGTGCTGGAGAACCAAACTGTGATGAAGTGGAGACAATAGAGTATTCACAACTCCAGCATTAACTACAGTGAACTGATCAATACTATAGCTTACTGGAGTTTTTCACAAcggtaaactgtggtgtattataGTATATCGtagtatcaccacaacagatcgattactgtAGTCGctgtgtaaccatagcaactgtagaatcaccacgacagatcgatcactgtagttgttgttaccatagcaactgtagaatcaccacaacagaccaattactttagttgtgttaccctagcaactatagaatcaccacaacagatttgttactgtagttgttgtgttaccatagcaactgtagaatcaccacgacagatcgatcactgtagttgttgttaccatagcaactgtagaatcaccacaacagaccaattactttagttgtgttaccctagcaactatagaatcaccacaacagatttgttactgtagttgttgtgttaccatagcaactgtagaatcaccacgacagatcgatcactgtagttgttgttaccatagcaactgtagaatcaccacaacagaccaattactttagttgtgttaccatagcaactatagaatcaccacaacagatttgtTACTGTAGTTGtagtgtcaccatagcaactgtagaatcaccacgacagatcgatcactgtagttgttgttaccatagcaactgtagaatcaccacaacagaccaattactttagttgtgttaccatagcaactgtagaatcaccacaacagatttgtTACTgtagtcgttgtgttaccatagcaactgtagaatcaccacgacagatcagttactgtagttgccatgttaccatagtaactgtagaatcaccacaacagatcgattactgtAGTTGCcatgttaccatagtaactgtagaatcaccacaacagatcgattactgtagttgttgtgttaccatagcaactgtagaatcaccacaacagatcagttactgtagttgttgtgttaccatagcaactgtataattaccacagcagatcagttactgtagttgttgtgttaccatagcagctgtagaatcaccacagcagatggACTGAGACTCTCCACTGTAATGTGGTTAAGCACTCCAGTGTTTGCTGTAATTGAGTGTAGTGATTTGAGTGTGGTTTTGCTGTTGAAATGTCTGATATTGGACACACTGAGGGACTGTTTGTGATTTTAACACTCAAATTCTGTCTCAGTGTTTTGGTCTTGTTTTTAGGCACAGAGGCGTTCACTGCAGAAGCAGAATGATCAGTTATTACGTCTTGTTTTCTGAAGAAAATCCTCTTCTAACTGAAGCCCGTGCAGAGATGTGCTGATGTCGTCAGATGAACACACACGTTTACTCTGGTGATGGGGTGTTTCTGACTCCATGTGCAGATGTTGGCTCTTGTTTTAGTCACTGATTTCATGTTTAACTCTTTACTTGTGTTGTTTCTCCAGTATTTGTGTCTTGATTTAAGATGGGTTGAGCTGTTTGTGCTGCACATCACTCCTGAGGATGATTTTGTAAAGAGTGCAGATATTTAGATGTGAACAGATGATTAATGTAGCACTAATAAATGAAGCTGTTTTCACTCTGTCATTAGCGCTATATCTCTGCACTCACTGGCCTTTAGCTCAGTCATCCTTATTACAAACATTCATTTAAAGCAGGACACTGCGGGTAAAACACTTTAGAATCATGCAGCTGTCTGTGGAGATCACTGATAAtgcatattcatatatttatatattttatttaggagAAATCCTGCACTAAGACAGAGATGTGCACTTCAGCAGTCCTCACTGTACACGCAGTCTTACCCACATTACTTATCATCCTTAGTAGAGGGATATGTTTATAGATAATTTGTCAAATTATAAATACgtttatttctcaaaataaataagcaaaatgtGAGAATATTGCAGTATTTcctgatttatttacttatgttcaTATTCCTCTCTGTAAAGCAGATTCTAATGTGTCAGAAACAACTCGTGCTCCGATTTCACTGTTTGCTTTTCATGCAAATTAGCGCATATTTAATGTAGttatgcctcatttgcatatttgaaCAAAACATCTTGAAGACATTTCACTGTAATTCTGAATGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188606

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024808 lncRNA downstream 318454 422064 ~ 422970 (-) True XLOC_011811
TCONS_00024807 lncRNA downstream 358983 378483 ~ 382441 (-) True XLOC_011810
TCONS_00023380 lncRNA downstream 359239 378483 ~ 382185 (-) False XLOC_011810
TCONS_00023374 lncRNA downstream 640046 99366 ~ 101378 (-) True XLOC_011805
TCONS_00024513 lncRNA upstream 5686 756769 ~ 792139 (-) True XLOC_011818
TCONS_00024514 lncRNA upstream 28177 779260 ~ 780017 (-) True XLOC_011819
TCONS_00023387 lncRNA upstream 60099 811182 ~ 814743 (-) True XLOC_011820
TCONS_00024515 lncRNA upstream 1106610 1857693 ~ 1874223 (-) True XLOC_011827
TCONS_00024516 lncRNA upstream 1124577 1875660 ~ 1880545 (-) False XLOC_011828
TCONS_00023385 mRNA downstream 5887 734133 ~ 735537 (-) True XLOC_011816
TCONS_00023384 mRNA downstream 19206 706630 ~ 722218 (-) True XLOC_011815
TCONS_00023383 mRNA downstream 60282 660126 ~ 681142 (-) True XLOC_011814
TCONS_00023382 mRNA downstream 132567 599084 ~ 608857 (-) True XLOC_011813
TCONS_00023381 mRNA downstream 276139 463746 ~ 465285 (-) True XLOC_011812
TCONS_00023388 mRNA upstream 105598 856681 ~ 868004 (-) True XLOC_011821
TCONS_00023389 mRNA upstream 166922 918005 ~ 945883 (-) True XLOC_011822
TCONS_00023390 mRNA upstream 323420 1074503 ~ 1174960 (-) True XLOC_011823
TCONS_00023391 mRNA upstream 642039 1393122 ~ 1407593 (-) False XLOC_011824
TCONS_00023392 mRNA upstream 642039 1393122 ~ 1407725 (-) True XLOC_011824
TCONS_00023378 other downstream 536114 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023401 other upstream 1414573 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023424 other upstream 2540257 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 4492257 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 4919835 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 5211892 5962975 ~ 5963065 (-) True XLOC_011866

Expression Profile

//