RNA id: TCONS_00023384


Basic Information

Item Value
RNA id TCONS_00023384
length 906
RNA type mRNA
GC content 0.62
exon number 4
gene id XLOC_011815
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 706630 ~ 722218 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTCTGGACTTCGCTGCTGGATGTTTCGgaggagcCGCAGGTGTGCTGGTTGGACACCCGTTTGACACAGTGAAGGTGCGGCTGCAGGTGCAGAGTGTGGACAAGCCCTTATACCGCGGTACAATTCACTGCTTCCAGTCCATCATCCGGCAGGAATCGATGCTGGGCCTCTACAAGGGCATCGGCTCCCCGCTGATGGGTCTGACCTTCATCAACGCCATCGTGTTCGGTGTGCAGGGGAACGCCATGCGGATGCTGGGCTCCGACACGCCGCTGCATCAGTTTATGGCAGGCGCCGCGGCCGGACTCATCCAGAGCGTGATCTGCTGCCCGATGGAGCTGGCCAAGACCCGTATGCAGATGCAGGGCACGGGCGAGAAGAGCTTATCCCGCCGGCTCTACAGGAACTCCCTGGACTGCCTGATCCGCATCTACCGCCGCCAGGGCTTCAGAGGGATCAACAGAGGCATGGTGAGCACCGTGATCCGCGAAACGCCGGGATTCGGGATCTACTTTCTGACATATGACACACTGACGCGCTCACTAGGCTGCGAGGCCGGCGACCGCTTCATCGTCCTCAAGCTGCTGCTGGCAGGCGGAGCCTCAGGCATCGCCTCCTGGATCTCCACCTACCCGGTGGATGTTATCAAATCCCGCCTCCAGGCTGACGGAGTGGGCGGAGACTGCAGATACTCCGGCATGCTGGACTGTTTTGCACAGAGCTGGCAGAGGGAAGGGTGGAGGGCGTTCACTCGAGGGCTGACCTCCACCCTCCTCAGGGCGTTTCCGGTCAACGCCACCACCTTCGCCACCGTCACGCTCTTCCTCATGTACATGCGGCAGGAGGAGGTGGAGGACGCCTGCGAGTCCATCCGGCCAGACCTCCAGCACAGCAGCCTCTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006844 acyl carnitine transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015227 acyl carnitine transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160385

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024808 lncRNA downstream 283660 422064 ~ 422970 (-) True XLOC_011811
TCONS_00024807 lncRNA downstream 324189 378483 ~ 382441 (-) True XLOC_011810
TCONS_00023380 lncRNA downstream 324445 378483 ~ 382185 (-) False XLOC_011810
TCONS_00023374 lncRNA downstream 605252 99366 ~ 101378 (-) True XLOC_011805
TCONS_00024513 lncRNA upstream 34551 756769 ~ 792139 (-) True XLOC_011818
TCONS_00024514 lncRNA upstream 57042 779260 ~ 780017 (-) True XLOC_011819
TCONS_00023387 lncRNA upstream 88964 811182 ~ 814743 (-) True XLOC_011820
TCONS_00024515 lncRNA upstream 1135475 1857693 ~ 1874223 (-) True XLOC_011827
TCONS_00024516 lncRNA upstream 1153442 1875660 ~ 1880545 (-) False XLOC_011828
TCONS_00023383 mRNA downstream 25488 660126 ~ 681142 (-) True XLOC_011814
TCONS_00023382 mRNA downstream 97773 599084 ~ 608857 (-) True XLOC_011813
TCONS_00023381 mRNA downstream 241345 463746 ~ 465285 (-) True XLOC_011812
TCONS_00023379 mRNA downstream 429584 262803 ~ 277046 (-) True XLOC_011809
TCONS_00023377 mRNA downstream 506314 189276 ~ 200316 (-) True XLOC_011807
TCONS_00023385 mRNA upstream 11915 734133 ~ 735537 (-) True XLOC_011816
TCONS_00023386 mRNA upstream 19206 741424 ~ 751083 (-) True XLOC_011817
TCONS_00023388 mRNA upstream 134463 856681 ~ 868004 (-) True XLOC_011821
TCONS_00023389 mRNA upstream 195787 918005 ~ 945883 (-) True XLOC_011822
TCONS_00023390 mRNA upstream 352285 1074503 ~ 1174960 (-) True XLOC_011823
TCONS_00023378 other downstream 501320 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023401 other upstream 1443438 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023424 other upstream 2569122 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 4521122 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 4948700 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 5240757 5962975 ~ 5963065 (-) True XLOC_011866

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000060_00193567_00197053.mRNA True 1353 mRNA 0.57 6 CI01000060 193452 ~ 197121 (+)