RNA id: TCONS_00025448


Basic Information

Item Value
RNA id TCONS_00025448
length 685
RNA type processed_transcript
GC content 0.48
exon number 3
gene id XLOC_012744
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18798840 ~ 18800052 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTGTGCTCCCCACATACCACTATATTGAGCAGAAGACACTGCTTGTGAGCAATCTGCACCCAATGGTCACCGAACAACAGCTTATTGAAAAGTTTGGTCCATTGGGGTCCATCTCGACTGTGCAAGTGTGCAGAAACAACATCGTCTCTCCTGTGTATGCCTTTGTGACTTTCCATCATCGACTCGATGCAGTGCGAGCACAAAAAGCTCTGAACTTCACTCATTTACTGAATAAACCTCTGATCATCATGTGGGGCCCAGACAAGACAACTGAGGTCCTCTCAGATTATGACAGCAGCTCTCAAAGACAAACAGAGGAGAGAGAGGCAGCTGGAGAAACAGAGGAGAAAAAGACCagtggagaaacagagagagaagcAGCTGGAGAAACAGAGGAGAGAGCGAACAGCGAGTCTTCATGGAGAAGAAGGATCTCCAACAATGTGAAAAGTGCTGTGAAAGCCACGGTAAGCAGTCCAGCAACCTGGGTCGGAGTCGGCATAGGTGTCTGTGCTGCTTATGCCTACTTCAGGAGCAGGAGCTAGTGTGGACACATTCTAAAAGACGAGAAGGCCTGCCTCACAATCTCCACTCATCATCCCCAGAGTGACCAATCACTGCTCCAGAAAGAACTTGATTTCCCCAGCAGGCCAAACACTTGcaataaatgtgaattgaataaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000136224

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027096 lncRNA upstream 28224 18733177 ~ 18770894 (+) False XLOC_012742
TCONS_00026891 lncRNA upstream 28612 18769682 ~ 18770506 (+) False XLOC_012742
TCONS_00026890 lncRNA upstream 65147 18733147 ~ 18733971 (+) False XLOC_012742
TCONS_00026889 lncRNA upstream 89351 18708889 ~ 18709767 (+) False XLOC_012740
TCONS_00026888 lncRNA upstream 122621 18675673 ~ 18676497 (+) False XLOC_012739
TCONS_00026893 lncRNA downstream 27167 18827219 ~ 18828097 (+) False XLOC_012745
TCONS_00025453 lncRNA downstream 110314 18910366 ~ 18911261 (+) False XLOC_012748
TCONS_00027098 lncRNA downstream 110318 18910370 ~ 18911615 (+) True XLOC_012748
TCONS_00027099 lncRNA downstream 168838 18968890 ~ 18969766 (+) True XLOC_012749
TCONS_00025458 lncRNA downstream 225937 19025989 ~ 19033213 (+) True XLOC_012752
TCONS_00025442 mRNA upstream 168036 18612388 ~ 18631082 (+) True XLOC_012738
TCONS_00025440 mRNA upstream 326861 18439332 ~ 18472257 (+) False XLOC_012737
TCONS_00025441 mRNA upstream 328189 18455029 ~ 18470929 (+) True XLOC_012737
TCONS_00025439 mRNA upstream 376575 18405992 ~ 18422543 (+) True XLOC_012736
TCONS_00025436 mRNA upstream 689086 18104235 ~ 18110032 (+) True XLOC_012733
TCONS_00025450 mRNA downstream 61307 18861359 ~ 18870284 (+) False XLOC_012746
TCONS_00025451 mRNA downstream 63115 18863167 ~ 18870632 (+) True XLOC_012746
TCONS_00025452 mRNA downstream 79681 18879733 ~ 18901017 (+) True XLOC_012747
TCONS_00025454 mRNA downstream 182025 18982077 ~ 18995283 (+) True XLOC_012750
TCONS_00025455 mRNA downstream 206011 19006063 ~ 19039960 (+) False XLOC_012751
TCONS_00025447 other upstream 28224 18770075 ~ 18770894 (+) True XLOC_012742
TCONS_00025446 other upstream 64759 18733425 ~ 18734359 (+) False XLOC_012742
TCONS_00025445 other upstream 73025 18725978 ~ 18726093 (+) True XLOC_012741
TCONS_00025444 other upstream 88963 18709049 ~ 18710155 (+) True XLOC_012740
TCONS_00025443 other upstream 122234 18675702 ~ 18676884 (+) True XLOC_012739
TCONS_00025449 other downstream 27197 18827249 ~ 18828485 (+) True XLOC_012745
TCONS_00025461 other downstream 323280 19123332 ~ 19124079 (+) True XLOC_012754
TCONS_00025507 other downstream 2221647 21021699 ~ 21023601 (+) True XLOC_012781
TCONS_00025513 other downstream 2391613 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025547 other downstream 4387367 23187419 ~ 23249572 (+) False XLOC_012803

Expression Profile

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