RNA id: XM_036980587.1


Basic Information

Item Value
RNA id XM_036980587.1
length 2080
RNA type mRNA
GC content 0.45
exon number 8
gene id tspan18b
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54593203 ~ 54716059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTTCAGCGTGTGGTTCGTTCAGTGAGTTAGGAAGAAAACTGTTTGCATTCCAATCTCTCTCTCGTCTGGAAGACAGCATGACCAAATTGGGGCTATAGTTATCTTCGGCTCTGGAATGTATTTGTTGAAGACTGAAGTCTAAGGCTTGTTGTTATTTTCTTGGACACATCTCCTACTTGGCTATTTTCTTAGAATATTTATTTCGTTTTTTTCTGCTCTGATTTTAGTGCATAATTCTATTATCTGACATATTTTGTGGAGAGAGCACCAGAAAGCTCGCGCAGAGGTGTGGGACTAAGCTGCAGTTTTGAGCTAAATgaaaacaggagaggaggagaaacagagaagtcatctgcttcatctgaacaAAGACGCAGAAACAGAAACTCATGCTGGGAGGCTCCTTCCTcctgggtgtgggtgtgtgggtgctGGTGGACCCTACAGGCTTCAAGGAGATCGTAGCAGCCAACCCTCTGCTCTTCACAGGAGTCTACATCATCCTTGCCATGGGGGGAATGCTTTTCCTATTGGGCTTCCTGGGCTGCTGTGGAGCCATCCGGGAGAACAAGTGTCTGCTGATGTTTTTTTTCATGCTCATCCTGGTCATCTTCCTGGCGGAACTAGCTGCAGCAATCCTGGCCTTCATATTCCGGGAGCATCTGACCAGAGAGTACTTCACGAAGGAGCTGAAGAGGCACTACCAGGGCTACAATAACACTGATGTCTTCACTGGAACGTGGAACGCTATCATGAACACTtttGACTGCTGTGGCGTGAACAGCCCGGTGGACTTTGAGGAGAGCCTGTTCAGACTGATAAACCCTAATGAGATGGTCCCTGCAGCCTGCTGCAGGAGGGGTAGTCACCCCGGAGACTCAGCCTACATTCCCCAGGAGGAGTGTCTGATGGGGAACATGCTGTTCAGAAACAACAAGGTGCTGGTACTGgGCTGCTACTCAGCGGTGGTGGACTACTTTGAGCTGTACATCTATGTGGCTGGAGCGCTGGCCATCGTGGTACTCACCATTGAGCTGTTTGCCATGGTCTTTGCCATGTGTCTCTTCAGAGGTATCCAGTAGGATTATCGCACCGCACCGTACACCGGACAGAAGGACTTTTTGGAGCTACAAAAGGGAAATCAGGAGAAGGGAAAGAAAATATGTACACTTGTAAATGTATTGTCCTCTTTTATATCTGCACAATGTATTGATTGgttggaaaacaaaacaaaacgacACTCAGAAAACAAACAACTTGTACTTCTCAGCTGGACCTTTGAGGTATTTGGTGGCAAAAAAAATTAATGATAGAAAGAGAAAAAGACAAGAACGACAGGAAAACGTATGTAAAGTGAAACAAATGTTTCATGGACCAGGTCTAACATGGACCGGGTGTATAGTAGTGGAACGCGAAGAGGACCTGGGTGAAACCAGGCGTGGTGAATAAGAGGACCCGGTTGAAGCCTGCCCTGCAGCAGAAGTAGCTTGagacccagatctgtttgtgctgtcttgctagCTAACTGGGACTCAGGCTAGAGCAGAAGACACTGCACTGACTTTTGGATGAAGAATATTTATACTTACTGAGTAAAAAGTTGGCTTGACTAATATAGAAATCTGTGTTTTATGTACACTTTAGCTGTTCCTTCCTATTACCACTTCTCCCTCCCCCGATCCCCCGCCCTTCCATCTACTGATACCACAATTCCTCCATctttcccactccctccctccacatacTATTGTTAGAGCCTTACCTCTTTAATGCTGTTAAAAGTCCCATctatactatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccttgtatgAATGAATGCATGTGTGCATGTTGCCCCTTTTGACCATTCGAGCTTGAAAGCCAACTTCTGATAAAAAGTTAaaatattgtatttgtattgtgaTGTTCATTGCAATTGTGGTTACATGTGGCTTAGgtgaaaataaatgtatttgtatGCATTTGTATTAGATTCTTGAAAAGACAATGACATTAAAATGTTCTAAATGTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66446 lncRNA downstream 134284 54394044 ~ 54458919 (-) True G59794
TU66362 lncRNA downstream 295915 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA downstream 295915 54295267 ~ 54297288 (-) True G59721
TU66360 lncRNA downstream 333290 54255010 ~ 54259913 (-) True G59720
TU66253 lncRNA downstream 369378 54192261 ~ 54223825 (-) True LOC110525336
TU66621 lncRNA upstream 1408 54717467 ~ 54717739 (-) True G59959
TU66627 lncRNA upstream 4719 54720778 ~ 54721359 (-) True G59965
TU66628 lncRNA upstream 5352 54721411 ~ 54721732 (-) True G59966
TU66666 lncRNA upstream 32303 54748362 ~ 54748677 (-) True G60002
TU66667 lncRNA upstream 32699 54748758 ~ 54749109 (-) True G60003
XM_036980538.1 mRNA downstream 22905 54504696 ~ 54570298 (-) False caprin1b
XM_036980569.1 mRNA downstream 22905 54504696 ~ 54570298 (-) True caprin1b
XM_036980550.1 mRNA downstream 33755 54504696 ~ 54559448 (-) False caprin1b
XM_036980570.1 mRNA downstream 50773 54504696 ~ 54542430 (-) False caprin1b
XM_036980545.1 mRNA downstream 50775 54504696 ~ 54542428 (-) False caprin1b
XM_036980597.1 mRNA upstream 114767 54830826 ~ 54871653 (-) False LOC110525455
XM_036980594.1 mRNA upstream 114767 54830826 ~ 54872325 (-) True LOC110525455
XM_021605592.2 mRNA upstream 189298 54905357 ~ 54934644 (-) True LOC110525462
XR_005052177.1 mRNA upstream 247397 54963456 ~ 54966553 (-) True LOC110525471
XR_005052176.1 mRNA upstream 262852 54978911 ~ 55034259 (-) True LOC118964914
TU65545 other downstream 796189 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 830307 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 1004433 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 1166887 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 1254816 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 13072 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 354333 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 434182 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 477238 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 487358 55203417 ~ 55203742 (-) True G60624

Expression Profile