RNA id: XR_005052177.1


Basic Information

Item Value
RNA id XR_005052177.1
length 847
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110525471
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54963456 ~ 54966553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCCTGAGGGGCTCGCTTGTGGGTGTGCTGGCAGGATATTTTTGTTTGTGCGTCAAGAATTCTACATACAGTAGCACGTTTGTATGAAGGTGTGATTATTCACAGGCAAATTGTTATATGCTATGGAGGTACATTTGTGTCTTTGTCGAGAGCAAAACGttttattttcaatcaaaaaGCAAATTTTTCAAACACAAAGGAAGTCATAGCGGACACCACCAAAGAAGGACTGtgatgatggcatctcaggATGAAAGAACACCGTCTGTCACGAAGAGTTAAGGAGTCTTTACAGCGTGTAGATGGTGCAGagaGCAAGCTGATCAAGGGGTCAAAAATGTAGATATTCCCAGATGTTCACTGCCCGAGGAAAAGGCAGTGGAAGCTTCATTGCtggcaaaagtgtccataaccagaggttatatctgCTGTTTTGTAGAACCCCTCAtgcatctgaactggctgacacagaTGGCATagcatgatcataggtatgttttgatgtgagagaggaagcctGTCCCATCATCGGCACCTCACACGCTCTTAAGATTTGGGCCCCCAGTTGGCCCGAAGGGTTAGGAGACACCGtgattgtgatgaactgagagaatattagggtagcactgtaattcattaatcgGATGCTGTCTACCGCTGGTCTTACCACTTTCCCTTTGTCttccacacctctctccccacctcgtctttcttcctTGTTTAATAATGCACACCGTATGttcattgaagtacagattgaacttgtatttatattataatgcatgtattatgttTTTATAACACCTGGCTAATGAACGTCTTTCAATAAatgtttcacattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66763 lncRNA downstream 138611 54824634 ~ 54824845 (-) True G60097
TU66762 lncRNA downstream 139821 54823429 ~ 54823635 (-) True G60096
TU66745 lncRNA downstream 151927 54811112 ~ 54811529 (-) True G60079
TU66737 lncRNA downstream 158137 54805043 ~ 54805319 (-) True G60071
TU66727 lncRNA downstream 165442 54797811 ~ 54798014 (-) True G60061
TU67159 lncRNA upstream 44526 55011079 ~ 55015648 (-) True G60478
TU67187 lncRNA upstream 77302 55043855 ~ 55044123 (-) True G60506
TU67199 lncRNA upstream 103057 55069610 ~ 55069845 (-) True G60517
TU67137 lncRNA upstream 105074 55071627 ~ 55081078 (-) True LOC110525476
TU67265 lncRNA upstream 203862 55170415 ~ 55170726 (-) True G60580
XM_021605592.2 mRNA downstream 28812 54905357 ~ 54934644 (-) True LOC110525462
XM_036980594.1 mRNA downstream 91131 54830826 ~ 54872325 (-) True LOC110525455
XM_036980597.1 mRNA downstream 91803 54830826 ~ 54871653 (-) False LOC110525455
XM_036980587.1 mRNA downstream 247397 54593203 ~ 54716059 (-) True tspan18b
XM_021605552.2 mRNA downstream 247398 54593203 ~ 54716058 (-) False tspan18b
XR_005052176.1 mRNA upstream 12358 54978911 ~ 55034259 (-) True LOC118964914
XM_021605612.2 mRNA upstream 105026 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA upstream 105026 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA upstream 105026 55071579 ~ 55128270 (-) False LOC110525476
XM_036980645.1 mRNA upstream 777854 55744407 ~ 55801039 (-) True LOC110525505
TU66641 other downstream 226212 54729131 ~ 54737244 (-) True G59978
TU65545 other downstream 1166442 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 1200560 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 1374686 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 1537140 53425964 ~ 53426316 (-) True G58718
TU67198 other upstream 103839 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 183688 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 226744 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 236864 55203417 ~ 55203742 (-) True G60624
TU68326 other upstream 866272 55832825 ~ 55833360 (-) False G61563

Expression Profile