RNA id: TU66360


Basic Information

Item Value
RNA id TU66360
length 249
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G59720
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54255010 ~ 54259913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacgacagtctggttcaggcatgaatgacacaaacaaacaagaatccgacaaggacaggagcagaaacagagagagatatagggacctaatcagagggacaaaagggaacaggtggggaacggggtgaatgggtagttagaggagacaagggacagctgggggaaagcgggggagaaaaggtaacctaacacgaccagcagagggagacagggtgaagggaaaggacagagacaagacaacatgacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66254 lncRNA downstream 31185 54191982 ~ 54223825 (-) False LOC110525336
TU66253 lncRNA downstream 31185 54192261 ~ 54223825 (-) True LOC110525336
TU66260 lncRNA downstream 68942 54185486 ~ 54186068 (-) True G59625
TU66308 lncRNA downstream 73380 54181174 ~ 54181630 (-) True G59672
TU66309 lncRNA downstream 74436 54180086 ~ 54180574 (-) True G59673
TU66362 lncRNA upstream 19319 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA upstream 35354 54295267 ~ 54297288 (-) True G59721
TU66446 lncRNA upstream 134131 54394044 ~ 54458919 (-) True G59794
TU66618 lncRNA upstream 439169 54699082 ~ 54705581 (-) True G59956
TU66619 lncRNA upstream 444717 54704630 ~ 54711130 (-) True G59957
XM_036980395.1 mRNA downstream 31024 54113139 ~ 54223986 (-) False LOC110525336
XM_036980399.1 mRNA downstream 31024 54113139 ~ 54223986 (-) False LOC110525336
XM_036980401.1 mRNA downstream 31024 54113139 ~ 54223986 (-) False LOC110525336
XM_036980403.1 mRNA downstream 31024 54113139 ~ 54223986 (-) False LOC110525336
XM_036980407.1 mRNA downstream 31024 54113139 ~ 54223986 (-) False LOC110525336
XM_021605396.2 mRNA upstream 48137 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA upstream 48137 54308050 ~ 54354009 (-) False LOC110525355
XM_021605410.2 mRNA upstream 48137 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA upstream 53862 54313775 ~ 54354010 (-) True LOC110525355
XM_036980458.1 mRNA upstream 113198 54373111 ~ 54382652 (-) False LOC110525376
TU65545 other downstream 457996 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 492114 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 666240 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 828694 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 916623 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 469218 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 810479 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 890328 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 933384 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 943504 55203417 ~ 55203742 (-) True G60624

Expression Profile