RNA id: XM_036980458.1


Basic Information

Item Value
RNA id XM_036980458.1
length 5976
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110525376
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54373111 ~ 54382667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAGCAGacaggtcagtgtgtgtagagAACACATTTACCAGGTGGAGTCAGGCTTATACTTCATTGCCCTGGACCGCTACACCAACAAGGCAGAGGAACTCAAGTTTGGACTACTGGTTTGGTCCGCCATAGTAatgagccttgctgttggaaaaccacgTCACAACAGTGTCCGACTTCCGGCTGTCGCAGATGCACATCCTCCGATTTTACTCCTCCACTTTCATCTGCAGTCGGTTGCTTCAGCCTTACCACTCAAACAAGCCCTGTGAAGAAGCAGAgatacttttgaggagatggaAAACTCCACTCCTCTATGTATTAGTGCCCATTGTGTACGTTGCTCATGCGTCGGTAATGGGCCGCGCAGTGCATTTTGGGTGAATTTGGGACAAGGAGAGCGCTCCTTTTAAGGAGTGAATGGGAGTCAATTGGTCGCTAGCTCAAAAACCCAACATTAGCATGTATTTCATGAATAAGAAGTACATTACAAATATTTTGAGACGTGATATAATTAATTTGTCTGTAATATCGTATAGCTTTGTAATCGTGACATTATGTACTTTAGAGGAAAATAGGCAGGTTTGTCGACTCAGCCTAACAACTTCAACGCGATTAGTCGACAGTCTGCTGGATGGTGCCTTATACGTTGATATCTCTGTATTTATTTAACATCTTTGGTTAAAGAATTCTGTGCATCCCCGGCCTCATTCACATTGTAGCTATCGGTTTCTATTCGGAGGCATTTTGGGAGTTGAAAAATCACTTCCGGTAAGTAACTTGGATGGTAAAGGTTAAAGGTATTAAAGGTAGCCTTGCTCTGGTCTCAAAACATTCACATTGGTGGGATATATCCGAGCAAATTCTGCATTGATCCCGCCTGCTTCAAAGTGTTTAAAGAGGAGGAATTCAAGAAAAGCGATGAAACAGCAAGACGTTACTGCTCTCTCTTCCAAGTATTATCAAATCTTTGGTATGATACATAACTAGCTATTTACACGGTTTTGAACGTCTGCTTGCTAGATAACGTTAGCGAACCTCAGTTTATGCGTTAGCTCGGTGCCACCAAATATAGGACAAAGTTGCAAATCGAACCCAAAAGTTAGTACAGACAAATAATACGAACTAGTTTTCATGCGACTTGTTAGCTAGGTGCTGTGGAAGAATGGGTTTGAGTTAATAAACGAGTTATCAACCACGCTCAATTGAGTTTTTCATGTGAGCACTGGAGATTGTTTCGGTATTTTAATGGGAGACGGGCTGCGTAACAGTGCATCTAGCGGGCGACACTTGCGGAGGTGCCGGCGACCTGCTAGGCTTGGATGGAGTCGCTTGCCGGGTACGTCTACAAAGCGGCGGCTGAGGGCCGAGTCCTGACGCTGGCCGCCTTGCTGCTCAACCACTCCAAGCCAGAGACACGATATCTACTGAGTTATGTGACCCACCTCGCCGGCCAAAGGTCAACTCCTCTCATCATCGCAGCTCGAAACGGACATGACAAAGTTGTGAGGCTGCTGCTGGATCACTACAGGGTGGATACTGAACAAACTGGCACAGTCAGATTTGACGGgtATGTCATTGATGGGGCCACTGCTCTGTGGTGTGCGGCTGGCGCAGGACACTTTGAGGTAGTCCGCCAGTTGGTGTGCCACCAGGCCAAAGTCAACCACACCACTGTCACCAACTCCACCCCCCTGAGGGCAGCCTGCTTTGACGGGTGTCTGGACATTGTGAAATACCTGGTGGACCACCAGGCCAAAATCGGCATCGCCAACAAGTATGACAACACCTGCCTGATGATTGCTGCCTACAAGGGCCATACGGACGTAGTGGGCTTCCTGCTGGAGCATGGAGCTGACCCTAACTCCAAGGCCCACTGTGGGGCAACCGCCCTGCACTTTGCTGCTGAGGAGGGCCACCTGGACATCGTTAAGGAGCTGGTGCGCTGCCAGGCTGCCATGGTGGTGAACGGCCACGGCATGACACCGATCAAGGTGGCGGCGGAGAGCTGCAAGGCGGAGGTGGTGGAGCTGCTGCTGTCTCATGCCAACTGTGGCCCGCACAGCCGCATCGAGGCCCTTGAGCTGCTGGGTGCCTCGTTCGCCAACGACCGGGAGAACTATGACATCCTCAAGACCTATCACTACCTGTACCTGGCCATGCTGGAGCGCCACCGCGATCCCGTCAGCCTCATCGCCAAGGTGCTGCTTCCGCCCATCGAGGCCTACAGCGGCCGGGGCGAGTGCCGCACCCTGCAGGAGCTGGAGGCAATCCGGGCAGACCGCAACGCGCTGCACATGGAGGGCCTGATGGTGCGTGAGCGTATTCTGGGATCGGATAACATTGACGTGTCACACCCCATCATCTACCGGGGAGCTGTGTACGCCGACAATATGGAGTTCGGCCAGTGCATCAAGCTATGGCTGCACGCGCTGCACCTGCGTCAGAAGGGCAACCGCAACACGCACAAGGACCTGCTGCGGTTCGCCCAGGTCTTCTCCCAGATGGTGCACCTGAAGGAGCCGGTGGGGGCGGAGCCAGTGGAGCAGGTGTTACACTGCAGTGTGCTGGAGATCCAGAGGAACATCGCAAGGGTGGAGGCGGCGCCTGAGGCAGAGCTGCACACGGCCATGGACAACTACGAGTCCAATATGTTCACCTTCCTCTACCTGGTCTGTATCAGCACCAAGACTGTGTGCGGCGAGGAGGCACGTGCCCATGTCAACGAGCAGATATACAACCTGATCCAGCTGGACCCGCGTTCACGGGAGGGCTTGTCCCTGTTGCACCTGGCCATCAGCTCCAGCACGCCTGTGGACGACTTCCACACCAACGACGTGTGCAGCTTCCCCAATGCTCAGGTCACCAAGCTGCTGCTGGACTGCGGTGCGCAAGTGAACGCGGTGGACCACGAGGGCAACAGTCCTCTGCACATCATCGTCCAGTACAACCGGCCTATCAGCGACTTCCTGACACTGCACGCCATCATCATCAGCCTGGTGGAGGCTGGCGCCCACACTGACATGACCAACAAGCAGAAGAAGACGCCACTGGACAAGAGCACCACAGGTGTGTCGGAGATCCTGCTCAAGACCCAGATGAAAATGAGCCTCAAGTGCCTGGCGGCACGTGCCGTGCGCCAGCACCAAATTACCTTCCGCAACCAGATCCCTAAGACCCTGGAGGAGTTTGTGGAGTTCCACTGATCCACCTGGCCAAGGAGGCTTTTTAAACCATTAGAAAACTTGTGTTcttgtgatttttttattttattttttatatatattttttattgttcTAATTTTCTATCAAATCAAAATGGTGTTTGCTGCTGATGATTAGGAATAGTAGGATgcattttgttttttaaaacaaTGGTTCCTTTTTTCTGTTTTAAGTATGAATCACAAGTACCAGCAGCATCTCCCATATCTCTCCCACTGAAGTGTTACGGTCTGTGGCTGTCATTGTGACACAGTGGGTGTCACTAGCAGAATGAGGAAATTGTCAGCCTGCTTTGAGCTTTCACTTTCCCAAAGTGTTCCAAAGAGAATACCTGGCAAAGCCAAGCATCCACACAATGGTGACAACAGCAGCACCTTTTGGCTGCTTTTAGTGCATGGACCCAATTGTCCCAGACTCCCAGCTAGGTTCGCAACCATGAAAAGTAGCATTACTCTATTGATTCATTTTGCAGGTTGCCTGTTGGAAGTGGTGTTGTATGTAGGTTTGCAGTGATTATTAAGGCCCGTTGTTTGAGCaagtgaatgtgtgtctgtgagagaagaGGTGAGAAGGTAGTAGTTGAATTTAGAACTTTGTACTTAAGAGTTTGTTTTTTCATAACCAATATAAAAAAAAAGGTTTATTTAAGAGGTGTGTGATTTTGTTTTGTACTTAAAAATAGATGTATAATGAGCTTTCTTTTACATGAACACTGTCTGGTAAAGATGTGCCTTATTTTATATTTTGGAATAATTAGGCCTAGATATCCCTTGTAACCAAGTCACCAACACTTGGGTTGTTGGCCCTCCTGACTTGCTTGGCTTCTGTGTGTGGAGACTACACGGCTTTGGTTGAGCATTGCCACATAATGACCATTTTTAAATGGATGCTGCTAGTATTGATGTTTGAGCATGTCTTCCATTCTCtgtcttgtgtttgtgtgtgggtacGCATGCTAAGCGAATGAGAGAGGGACTGTGGATTGTTTGTGGCGGTGTTGAATGTTGGCCTTTAGCCTAGGCTTTTCCACTCATACTTGCAACCTGTCGTTTGTCCTTAACAACTAACGATTCTAATGTCTGTAATTTTGTGTGTTCTAATCAGATGATCAGAGATTAAAGCTGAGAATGAAAGGTGATTTGATTCAAGATTTTCATCCAAGTAAATCATTAACTGTGTGACCgtatgtttttattttggggggcTTGAGTGGAGATTGTATGTATTTTGTGTTTGAGGTGAGTAGTGGACTGAGATGCAAATTAGCCTAAAGACAGTTTAACTCAGTGTTTCTTCATCAGTTTACGTTTGTCAGAAATACCAATACCAAATGTTTTAACATTGGTCCAAAAAATGTCATGTGTAAATGTAACATTTTCTGACATCCAAGAGGGTAGTGTCAAAATTGGTCCAATGTCACATGCAATGACCCACATCTCATGCATACAGATGGCTTCTGGATTGAGTCAGAGCAACAGTGGGCTTAAATCTTAACTGATaattccacacaaacacacacagctatcATTTCATATGGAATCTGGCCAATTCACCCTGTTGCTATACAGATATTGCTCAATTGTTAGGATTTTTCAATTTCATGTGATATGATGGAATGTGTGATAACACTGGTAGATCTTTTCTGATAGATATTGTAGTCAAGGTGCTCTATTTTGGAGTATtttattttgaaatgtattttttatctccctttttcttcccaatttcgtgatatcaaattatgatcttgtctcattgctgcaactccccaatgggcttgggagaggtgaaggtcgagtcatgcctcctctgaaacatgacccgcctaaccGCACTTTTTAACACCTGCCAGCTTAACCCgtaagccagctgcaccaatgtgttggaggaaacaacACCATCTTACTGACAAATGAATTCATCCTGCAGGCACCTGGCCTGCCACATGGAGTtgctagagtgcgatgagccaagtaaagcccctctggccaaaccctcccctaacccggacaacgctgagccaattgtgcgctgccctatgggacaaAACTGTCGTAACATTCAATTATCAATTAATTTCTGTCATAGCATTCAATTATTGATTAATTTAATTCTTGCACCATGCAATCAATGATCAGTTCTTAAGATGTCTTTTCCTTATCCATACTGTCTGCACCATGATCTATTTAGCCTGTGCACATATGACAGACAGTTGTTGTTGGTGGGAGCAGATCCCTGGAGGAGCGTGTATTGATCCTGCTGTAGAATTAATTGCGGCCAGCAGTTCTAACAAATGAGTCACTCAGAAAAACAAATCATGACTCGAATCAGTAGAAATGGTTGTTTCAGTGGAAGGGCTCAGCACAGCAAGACTGGTGTGCTTTTTGGCCAATTCTCATGTCTGTGGTGTGCTGGGGGTCCCTGAGAGATGGGGCTGAAGCAGGTCCACACTCGCCATGGTTACCGCTCTTCTGGCGTCTTCCCGATAGCTACttgctcctcctcatcctcctgccTGTTGAAGAAGCCCAGctgggaaggcagagagaggggaaagagtgaAACCCAGGGGTTAAAGCAAAGAAAATCACTCAATCTCAGATTGATTGTCTGCGGGGCCAAGTTAACCTCCgctttcatgtaaaaaaaaaaaaaaaaaaaaaaaaagttatgacCATCATGTTGTTAGGGAAAGAGTACTGTAATGATCTTTTGTGCATGTATTAAACTGAAAGTTTGACCAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66362 lncRNA downstream 75823 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA downstream 75823 54295267 ~ 54297288 (-) True G59721
TU66360 lncRNA downstream 113198 54255010 ~ 54259913 (-) True G59720
TU66254 lncRNA downstream 149286 54191982 ~ 54223825 (-) False LOC110525336
TU66446 lncRNA upstream 11392 54394044 ~ 54458919 (-) True G59794
TU66618 lncRNA upstream 316430 54699082 ~ 54705581 (-) True G59956
TU66619 lncRNA upstream 321978 54704630 ~ 54711130 (-) True G59957
TU66621 lncRNA upstream 334815 54717467 ~ 54717739 (-) True G59959
TU66627 lncRNA upstream 338126 54720778 ~ 54721359 (-) True G59965
XM_021605410.2 mRNA downstream 19084 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA downstream 19101 54313775 ~ 54354010 (-) True LOC110525355
XM_021605396.2 mRNA downstream 19102 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA downstream 19102 54308050 ~ 54354009 (-) False LOC110525355
XM_036980399.1 mRNA downstream 149125 54113139 ~ 54223986 (-) False LOC110525336
XM_021605457.2 mRNA upstream 81755 54464407 ~ 54503021 (-) True nat10
XM_036980561.1 mRNA upstream 122044 54504696 ~ 54537346 (-) False caprin1b
XM_036980540.1 mRNA upstream 122044 54504696 ~ 54542083 (-) False caprin1b
XM_036980545.1 mRNA upstream 122044 54504696 ~ 54542428 (-) False caprin1b
XM_036980570.1 mRNA upstream 122044 54504696 ~ 54542430 (-) False caprin1b
TU65545 other downstream 576097 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 610215 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 784341 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 946795 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 1034724 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 346479 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 687740 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 767589 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 810645 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 820765 55203417 ~ 55203742 (-) True G60624

Expression Profile