RNA id: XM_036980540.1


Basic Information

Item Value
RNA id XM_036980540.1
length 2966
RNA type mRNA
GC content 0.53
exon number 17
gene id caprin1b
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54504696 ~ 54570298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAAATGTTAGTTAGCTATCTGGGCCATCTGCATCCGCGGTGTGCTGCCTGGTTGAAAATCTTCTAACGTTGCAGGCTTTATGCGATGATAGACGAATGTTATCTGGCATCTCGATGCCCGCAGCAATGAATGGCAACAGGACAGTGCAGTCGGCCAGCCCGGACGTGGGACCCATTCCTGGACAGATCACCCTGGGTGGAGGGCAGTCCTCTGGGGCCCAGACCGAGGCCATGAAGCAGGTCCTTGGCGTCATCGATAAGAAGGTCCGCAACATGGAGAAGAAAAAGGGCAAGCTGGATGATTATCAAGCCAAGAAAAATAAAGGGGAGCGTCTCAACCAGGACCAGCTGGATGCCCTGACCAAGTATCAGGAAGTGACTAATAATCTGGAGTTTGCCAGAGAGCTACAGAAGAGCTTCCTCGCACTGGGGCAAGATATCCAGAAGGCAGTGAAGAAGGCAGTGCGGCGGGAGCAGCtccagagagaggaggctgagcagAAAAGACTGAAGACTGTGCTGGAGCTCCAGTTCCTCCTGGACAGGCTGGGAGAGGACAGTGTAAGGCAGGAGTTGAGACAGGGGGCTGCCGGGGGAGGCACACCCTCACTCCTCACAGACTCAGAGCTCACCAACCTGGATGAGCTTTACAAACTAGTGGGGCCAGAACGAGACCAAAACGCCAGGTTGTCTGACCAGTACGAAGAGGCTTCTCAACACTTCATGGATCTGTTGGAGGGGAAGGACAAGGCTGCAGCAGGAACAACATACAAAGCTCTGAAGGACAGCCTGGACCGGGTGCTGCTAAGCGGGTACTTTGACAAAGCCCAGTCCCACCAGAATGGAGTGtgtgaggaggagaaggatgaggagCAGCAGTTGGAAGCAGTAGTGGAGTTGGCAGAGGAGCAGACCGTCGACCAAGAGGGTGAAATAGTTGAAGAGTACATAGAGCCCATTAAGGTGGAGGCTACAGAGTTCGTAAACAGACAGTTCATTCCAGACACCATGTACAGCAGCAGTGACAAGGAGCAAGGAGACAAGTGGACGACAGAAACAGAGGTGGAGAGTGTCATCCAGCAACAGCCTGTACAGTCAGCCCTTCCCCCCAATGACTTGGAGACCCACTCCCTGAACGTAGCCACAGTCACACCCCCGGTGGTCAGGAAGCAGGCAGTCCAGGACCTCTTGTCACAGATGCAGGGGCCTTACAACTTCATGCAGGACTCTATGCTGGAGTTTGATGGCCAGCTCATTGACCCAGCCATTGTGTCAGCCCAGCCCATGAAGCCTGCAGCTCAGAACATAGACCTTCCTCAGTTGGGCTGTCCCCCAGTCCATCTAAAATCATGCCTCTCACCACACAACACCGTCCCGGTACAGCCTGAGCCCATGCAGGTTCCCTTGGTGTCCCCTACGCCTGAGTCGTACACCACCCCGTGCCCCATGTACCAGTCATCACACACGCCAGAAACACGCCCACATGCGGACTCCATCGACACCATCCagGAGTCCATGTCCCTGTCATCAGAGCAGCAGCAGGTCTTCCAGTCTGTCAACGTCTCCAAACCCCCACACATCTCCGGCATCAATGTCAATGCAGCACCATTCCAGTCCATGCAGACAGTGTTCAACCTCAATGCCCCTGTCCCGCCGGCCAATGAGGCGGAAGCCTTGACCCAGGCCAGCCAATACCAGAACAGCTACAGCCAGCAGGGGTTCAGCAGCCAATCACAGCAGCTCCCTGTGGAGCAGACAGAAATGCAGACTGACCAGCTGCAGTCTGTGGTTGGTGCCTTCCACTCCCAGGACCCATCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCAGCCAGGCCCTGCCCCAGGGTCAGCAGGGTCCAGGGTTCATCCCCGCGGCTGGTCGCCAGGCCCAGTCCTTCTACAACAGCAGAGGCATGACCCGCGGAGGCCCCCGTAACGCCCGCGGCATGGTCAACGGATACAGAGGGCCCTCCAATGGATTCAGAGGTGGATATGACGGTTACCGACCTCCCTTCGCCAACACTCCAAACTCTGGATATCAACAGGCTCAATTCAACACCTCTCGGGATTACTCCAATGGTGGCAACTACCAGCGGGGGGAAGGTTATAATCAGAACTACAAGCGTGGAGCAGGCCAGGGATCCAGAGGGATGTCTCGAGGAGGCAATGCCCAGGCCATGAGGTCCTGATCGGGCCTGTGTTTGACTGTCCCAATTCACCCCTTCCCCTTGGCCCTAACATTTCAATGTTTGCAGAAACGTCTGGTACGTATAACGGTATAGTGGTGGACTTATTTACTTGGTTATATTTTTCCTGGGTGGGGCAAGTTGAAGGGTCAGGGCCAAGGTGGGGGGTGGGGTAAGGAACGACTGGAACAGATTTTGACTGACAACTTTCCACACCACACTAAACATTCGAGATATCCAGAATGCATTTTGCCCCATCACTTTTATTTGTCCTTTTTGTTTCTCATCAGTGGTATTTTTCCTGGCTTTTGGATCAAAGTAATGCTGCTTTGATATTGAAAAAATATTAATGTTTTAAAATGAGACTGAATACACAAGCCAATCTGTAAATCCTTAGTGTTACAATGGTTTTAAGCAAGCCTGTAAACTTGAAAGAtttcatagatttttttttttttataaaataaaacaTGCCACTGCTGGTCCGAGCCCCCGGGAGTGTTTCTTTCTCTTGCCCAGTCCCcccttttttgttttgttcacaTATCATCTTTGTTCTAAAAAGCATTTTTGTTATGTTTTTAAAAGAAGCTCCCAATTCCTCAGTTTGTAAATTGATGTTGCTTCAAGAGTTTCAATAAAGATGTTGCATTACCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66446 lncRNA downstream 45777 54394044 ~ 54458919 (-) True G59794
TU66362 lncRNA downstream 207408 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA downstream 207408 54295267 ~ 54297288 (-) True G59721
TU66360 lncRNA downstream 244783 54255010 ~ 54259913 (-) True G59720
TU66253 lncRNA downstream 280871 54192261 ~ 54223825 (-) True LOC110525336
TU66618 lncRNA upstream 156999 54699082 ~ 54705581 (-) True G59956
TU66619 lncRNA upstream 162547 54704630 ~ 54711130 (-) True G59957
TU66621 lncRNA upstream 175384 54717467 ~ 54717739 (-) True G59959
TU66627 lncRNA upstream 178695 54720778 ~ 54721359 (-) True G59965
TU66628 lncRNA upstream 179328 54721411 ~ 54721732 (-) True G59966
XM_021605457.2 mRNA downstream 1675 54464407 ~ 54503021 (-) True nat10
XM_021605431.2 mRNA downstream 122029 54373111 ~ 54382667 (-) False LOC110525376
XM_036980449.1 mRNA downstream 122029 54373111 ~ 54382667 (-) True LOC110525376
XM_036980458.1 mRNA downstream 122044 54373111 ~ 54382652 (-) False LOC110525376
XM_021605420.2 mRNA downstream 150686 54313775 ~ 54354010 (-) True LOC110525355
XM_021605572.2 mRNA upstream 51120 54593203 ~ 54623900 (-) False tspan18b
XM_021605563.2 mRNA upstream 51120 54593203 ~ 54716057 (-) False tspan18b
XM_021605543.2 mRNA upstream 51120 54593203 ~ 54716058 (-) False tspan18b
XM_021605552.2 mRNA upstream 51120 54593203 ~ 54716058 (-) False tspan18b
XM_036980577.1 mRNA upstream 51120 54593203 ~ 54716058 (-) False tspan18b
TU65545 other downstream 707682 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 741800 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 915926 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 1078380 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 1166309 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 187048 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 528309 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 608158 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 651214 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 661334 55203417 ~ 55203742 (-) True G60624

Expression Profile