RNA id: XM_021605457.2


Basic Information

Item Value
RNA id XM_021605457.2
length 4987
RNA type mRNA
GC content 0.48
exon number 27
gene id nat10
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54464407 ~ 54503021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCGCATAGTTCTGACGTCATAGCAGGGTCCTTCAGAACCGCCGTCCCCACGTGAGTTTTTTCGGCATGACTGCAGCATGTAAACTAAACTAACTGCTTCCAGAGATTTGTCGTGTTTTCATCTACATTTATTAGTTTAATCCGGATTACACACCAGTGGGTTTACTAACTACGTCAGGGACCACCATGGCAACATTTCGGAAAAAGATAGATAACAGGATCCGTGTCCAGATAGATAATGGCGTTTCCGAGCAACACCGCACCATGTTCGTGGTGGTCGGGGACCATGGCAGAGACCAGGTTGTCATCCTGCACCACATGCTGTCCAAAGCCGCAGTCAGAGCCAGACCATCTGTCCTCTGGTGCTATAAGAAAGAGCTGGGCTTCAGCAGCAACCGAAAGAAGCGCATGCGTCAGCTCCAGAAGAAGATCAAGACCGGCACTCTGAACATTAAGCAAGACGACCCCTTTGAGCTGTTTGTCGCTGCCACTAACATccgctactgctactacaacgaGACACACAAGATTCTCGGAAACACTTATGGCATGTGCATCCTGCAGgacTTTGAGGCTCTCACTCCCAATCTCCTGGCTCGAACTGTGGAGACTGTGGAAGGAGGAGGGATCGTGGTAATTCTTCTCAGGACGGTCAACTCACTCAAGCAGCTGTACACAATGACTATGGATGTTCATTCTCGCTACAGGACCGAGGCCCATCAGGACGTGGTGGGAAGGTTCAATGAGAGGTTCATCCTATCTCTGTCGTCCTGTAAGACGTGCGTTGTCATTGACGACCAGCTCAACGTCCTGCCCATCTCCAGCCACATTGCCAACATCAAGCCTGTTCCTCCCAAGACTCAGGAGGACAGTCTTTCGCCACGGGAACAGGAGCTGAATGAGTTAAAGGAATCTCTACAGGACACGCAGCCTGTTGGTGTGCTGGTGGACAGCTGCAAGACCATGGACCAGGCCAAGGCGGTGCTGAAGTTCATCGAGGCCATCTCAGAGAAGACCCTGCGGAGCACTGTGGCTCTGACTGCAGCTAGAGGCAGGGGCAAGTCTGCAGCACTGGGACTGGCTGTGGCTGGGGCTGTGGCATTTGGCTACTCCAACATCTTCATCACCTCCCCCAGCCCAGACAACCTGCACACTCTGTTTGAATTCATCTTCAAAGGCTTCGATGCCCTTCAATACCAGGAGCACCTGGACTATGAGATCATCCAGTCTCTGAACCCTGAGTTCAGCAAGGCTGTGGTTAGAGTCAACATCTTTAAGGAGCATAGACAGACTATTCAGTACATCCACCCGGCTGATTCAGTGAAGCTGGGTCAGGCTGAGCTGCTGGTGATAGATGAAGCTGCAGCCATCCCCCTTCCTCTGGTCAAGAAGCTGCTCGGACCATACCTGGTCTTCATGGCCTCCACCATCAACGGGTATGAGGGCACAGGTCGTTCTCTCTCCCTGAAGTTGATCCAACAGTTGAGGCAGCAGAGTTCAGAGAGCCAGCAGAGTCTGTCAGCAGAGAACAGGAGCACCAATACAGCCAGGCTAAATGCAGCTCGCTCCCTCCAAGAGGTGTCCCTCCATGAGTCCATCCGTTATGCCATGGGAGACCCTGTAGAGAAGTGGCTCAACGAGCTGCTGTGTCTGGACTGTCTAAACATCCCCAGAGTCATCTCTGGCTGCCCCCTGCCACAGACCTGCGACCTATACTATGTGAACAGAGACACACTGTTCTGCTACCACAAGGCATCTGAAGCCTTCCTACAGAGACTCATGGCTCTCTATGTGGCTTCGCACTACAAGAACTCTCCCAACGACCTGCAGATGTTGTCAGATGCCCCGGCACATCACCTCTTCTGCCTACTGCCTCCTGTTCCTCCCACACAGAACTCACTGCCAGAGGTCCTGGCTGTCATACAGgtgtgtctggaaggagagatcTCTCGTCAGTCCATCCTCAACAGTCTGTCCAGAGGAAAGAAGGCTTCCGGTGACCTCATCCCCTGGACCGTGTCAGAGCAGTTCCAAGACCCCGAGTTTGGCAGTCTGTCTGGAGGCAGGGTGGTGCGCATCGCTGTCAACCCTGACTATCAGGGGATGGGTTATGGCTCCAGAGCACTGCAACAGTTACAGCTGTACTACGAGGGTCAGTTCCCCTACATGGATGAGAACGCACAGACCGCTAACAGCCAGATCACCTCTGTCACCAGCGAGGCGGTGAGCCTCCTAGAAGAGGTGTTGCACCCTAGGAAGGACCTCCCTCCTCTGCTTCTGAAGCTGAGTGAGAGGAGGGCCGAGAGACTAGAATACCTGGGAGTATCCTATGGTCTCACACCTCCGCTGCTGAAGTTTTGGAAGAAAGCTGGTTTTGTCCCTGTCTATTTGCGGCAAACCCCTAACGACCTGACGGGGGAGCACTCGTTGGTGATGTTGAAGGAGCTCAACACAGTGGAGGCTCCTGAACAGGGCCAGTGGCTGTCTGCCTTCTGGAAAGATTTCCGTCGGCGCTTCCTGTCTCTGCTCTCCTACCAGTTCAGCAGCTTCTCTCCCAGTATGGCCCTCAACATCCTGCAGAACAAGAGCACCACCAAGACGGATGCCAGCTCGTCCCTGAGCAGTTCTGAGCTGTCTGGACAGTTCAGCCCCTATGATCTGAAGCGTCTGGAGATGTACTCTAGGAACATGGTGGACTACCACCTCATCATGGACCTCATCCCTGCCGTGGCACGCATGTTCTTCCTCAAACAGCTGGGAGACGTGACCCTGTCCGCCGCACAGTGTGCTCTGTTGCTAGGTGTGGGGCTGCAGCATAAATCAGTTGACCAGCTGGAGAAGGAGATTGACCTTCCCAGCTCTCAGCTCATGGGACTGTTCAACCGCCTCATCAGGAAAGTAGTGCAGTTCTTCAACAGAATCCAGGAGAAGGCCATTGAGGCAGAGATGGTTGTATCTAAAGACATCTCCATGGAGCCCACGGTCAAAACCCTCAATGATGATCTAGATGAGGCAGCCAAAGAGTTCCAGGAGAAACACAAACAGGACATGGAGAAGGTCAAGGAGATGGACCTGCAACAGTACCTGATCCGAGGAGATGAAGAGGAATGGGACCAGGTGTTGAAGAAAGcaggacagacagctgttgtCAGCATAAAGAGTGACAAGAAGAGGAAGTATGAGCAGCCGAGGCCAGACAAAAACGAGGGAGGAGATACACGACACGGCAAActgaagaagaagacgaagaagggAGGAGGCAAGGAGAAGAACAAGTTTGAAAAGAGGCCGTTATAGTGTAAATTATAGTTGTTTTTATATTCGCTTAAAGATTTTATTAgaaatgtagttttttttttcaGATCCACTTTACTAAGTTTCATAACATTTAATTTAGTTTGTCTTATGGACAGAAATAATCCTTTGCATGGAAGGCTGTGAGACGGGttgtatagtgtttgtgttttttgGGATGTCACTGGGGCAGCAATGCACAAACTGCTGGGTCAGGTCTTAGTTTGGGTTTAAAGGTAGATTCAGCGAGATCCCATAGATGCACGAAGTAAACCATGGGAAtgggtcaatttccgcaacaacCAGGAGCGCTGAAGCGTGAGGCTTCTCCGCTGTATTGTTCCCGTAGTTACCCGTGCGCATGCCGCAGATACTCTGTTCAACTGTGAGAGCAGTCTTGCATCATGCTCATCTGAATGGGCGCGTTCGAGCAGCCGCTTTGCATTTCAGGGTTGAAGTTGTCCGACTTGCACCGAATTGTTCATTGCATGGAGTTTTGACTGCAAGTTTCTGCAGTTTCTCTAACTTGATCCTGTAGTCGCCGCCTGCATTGTGGGAAGTtctattgtcaaccaatcattagggtgtttttgtttgaccaaTTTTCCAATAGAGAGAGAttaaatatatacattatattccccaaaatgttttatttaaggCTCTCATTAATTGATTGTACAATGTGTACACATACTCTGTGTGTGATATGGGGGTTAAAAATGTGTTCATCTCGACATTATAAAAAAACCTTTTATAAACACTGCAATGTTGATCAAACCTTGCTGTTAAAAAAACACATTAGTGTCTGACTTTAGGCTGTCGCAGATGCACCTCCCCCGTCTACTGTCGGTTGCTTCTGCCTCACCACGCAAACACGCCCATCATATCTGCGGTGCTGCTAGATCACGCTGAATCTACTTTTATAATTTAAAGTCGGTCTAAATATGATCTGCCAGATCCAGACACTTTAGAAAAGAACAAAACATTAACACCCCATTAGATATTTTCCCCAAAAACAAATGGAACATAATTcataatgttttttatttgtttgagtcaaattggtttaattatttcagtttaaatagttttttcatttattttagtTTACTATAACAACCTTAGTGTACAGCAGTAGGACTGTGCTTTGACCAATGGCAGTGTCACCTTTCTCTGTGCCTAGCCCTGTACCCAAGGGTTAGATGGAATGGGACAGAGTACCATCCATAGTGAAAATGAATCTATTAGACTTTATGTACCCACCACCTGAGGATAGGAGACAGCATACAGTGGTGACAGTTCCACCCATATAAATAGAATAATTATTTGCTATGGTTCCACCACCTGCCTTTTCCTGTACCTACTGTAACCGGCTCATTTAATCCAGTACCAACAATATATGGAGTTGCTTACATTCAGATGAGTTGGAGTCTGCAAGGGTCAACATACTTAAAGATGATTCATTGAATGATGAGCATACGTTTGACTTTTTGTATAATTTGACCATTGTCACCTAGCCTCGATCTTCAGTGAATGGAAAACGTGCCTGCTGTCTGTTCTAGTATTTTTTTTGCGGAGAATGAGTTTCATATGGAAAGTAAAGTGGCCTACCTTTCTACTTACTGGGAGACAAGTACAAATAACTTAATAAAGCAGCATGATGTATGTTTTATTGATTAACTACTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K14521 NAT10, KRE33; N-acetyltransferase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66446 lncRNA downstream 5488 54394044 ~ 54458919 (-) True G59794
TU66362 lncRNA downstream 167119 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA downstream 167119 54295267 ~ 54297288 (-) True G59721
TU66360 lncRNA downstream 204494 54255010 ~ 54259913 (-) True G59720
TU66254 lncRNA downstream 240582 54191982 ~ 54223825 (-) False LOC110525336
TU66618 lncRNA upstream 196061 54699082 ~ 54705581 (-) True G59956
TU66619 lncRNA upstream 201609 54704630 ~ 54711130 (-) True G59957
TU66621 lncRNA upstream 214446 54717467 ~ 54717739 (-) True G59959
TU66627 lncRNA upstream 217757 54720778 ~ 54721359 (-) True G59965
TU66628 lncRNA upstream 218390 54721411 ~ 54721732 (-) True G59966
XM_021605431.2 mRNA downstream 81740 54373111 ~ 54382667 (-) False LOC110525376
XM_036980449.1 mRNA downstream 81740 54373111 ~ 54382667 (-) True LOC110525376
XM_036980458.1 mRNA downstream 81755 54373111 ~ 54382652 (-) False LOC110525376
XM_021605410.2 mRNA downstream 110380 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA downstream 110397 54313775 ~ 54354010 (-) True LOC110525355
XM_036980561.1 mRNA upstream 1675 54504696 ~ 54537346 (-) False caprin1b
XM_036980540.1 mRNA upstream 1675 54504696 ~ 54542083 (-) False caprin1b
XM_036980545.1 mRNA upstream 1675 54504696 ~ 54542428 (-) False caprin1b
XM_036980570.1 mRNA upstream 1675 54504696 ~ 54542430 (-) False caprin1b
XM_036980550.1 mRNA upstream 1675 54504696 ~ 54559448 (-) False caprin1b
TU65545 other downstream 667393 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 701511 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 875637 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 1038091 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 1126020 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 226110 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 567371 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 647220 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 690276 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 700396 55203417 ~ 55203742 (-) True G60624

Expression Profile