RNA id: XM_021605410.2


Basic Information

Item Value
RNA id XM_021605410.2
length 9927
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110525355
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54308050 ~ 54354027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCTTTGCGATCTGGGCTCTGCTCATGTGACTGTCTGTTTCCTAAACTGGGAAACAGTATACGGATAGCTAGTACAACGAATTAGCGCCATGCAAGAAATTATGTTGAAATAGCTTTTCCAGAGGATATGAATGTAATCAATCGCAAGTATACTAGATTGTTATTTGTCAATCATATTGGTAAATGCATGAATGTGTCAAAGCTAAGTGTAGCCAGTACATTTGTGCTTGCTAGCGAATCAGCTAGCTAGTCTCAGCTAGCTTTAGTTGGTCCGCCTACGATGACAAATTTCAAcagaaatacaataaataaagCCTCTGCATGGCGAGCTAGCAGCAGCAGAAGTGACTCTCCCTAGAGCAGGCAGAGAGCAGTGGTGTGGCCCCGGCCTGTACAGGAGGAGAACCATGGCCTCTCGTCATCAAAGGAACTCTGTGCGGATCCTGTCCACCCGGGAGCGCGGCTCGCAGGCCTTTGGCTCCCAGCGCCTCCTGCAGCAGATGGTGGAGGAGAAGGTCCGCTGGATGAAATGGCAGAGTCAGAAAGTAGAGCTGCCAGATAGCCCTCGCTCCACGTTCCTGTTGGCCTTCAGCCCAGACCGGACCCTCATGGCTTCCACTCACGTCAACCACAACATCTACATCACAGAGGTGAAGACTGGAAAGTGCCTGCATTCGCTCGTGGGCCACCGCCGCACACCCTGGTGTGTGACCTTTCACCCCACCATCCCCGGCCTGGTGGCCTCCGGGTGCCTTGACGGAGAGGTCCGCATCTGGGACCTGCATGGTGGCAGTGAGAGCTGGTTCACAGAGAGCAACGTTGCCATTGCCTCGCTTACCTTCCACCCCACCGCCCAGCTCCTCCTCATCGCCACCAACAATGAGCTACACTTCTGGGACTGGAGTCGGCCCGAGCCCTTCGCCGTGGTCAAAACCGGCAGTGAGACTGAAAGAGTCAGgTTGGTGAGGTTTGATCCTTTGGGGCACAATCTTCTGACGGCTATTGTGAACCCCTCCAACCAGCAGAATGATGATGAGTCCGAGGTCCCCATGGACAGTGTGGAGATGCCCCACTTCCGCCAGCGCTCCTTCCTGCCCTCCCAGCCTGTACGCCGCACGCCAATCCTCCACAACTTCCTGCACATCCTGTCATCACGCTCGTCGGGGGCGCAAGCTGGGGGGGATGCTTCCCGCCCTGGCGGAGAGGGCAGCGGTGAGCCTCCCAGCATGCCTTTGGGCCAGTACCCAGCCTCGCAGGACCGTGGACTGCCCTACCCAGGTTGCACCCAGCACCTGGGCATGGTGTGCCTCTGCAGCCGCTGCATGGCCAACCGCAGCCCCTCTCTGGGGGAGGGTCCCTCCACCTCCAGGCCTGTTGTCCACCCCGAGCTTCCCCAGGTGGCCTCTCAGCCAGCCCCCCACGCTTCCACCTTTTCGGCCCGTACGGAGCCCCGGCAGCCTTCAGAGCCCACTGGAGCCCAGCAGCGGCCCTCGGCCTtcactacagtctactacagtgccGGCAGCTCCCTGCACCGCGCCGTGCCTACCACCCACGTGGCCAGCCAGCCCCTGAGCCAGCAGCTGTTGGCCCCGCCCGCCAACCACCAACCCCCATCCCGCCCTCTGCCCGGACCTGACTGGACACGCAGCCTGCTAAACATGAGAAGCTCAGAGAATGGGGCCGGAAGTGGATGGAGCAGTGGAGGGAGTATGGGTGGTGTTGGGGGTGGGATGCTGCCCCCCCGGACCAGCTCATCTTCTGTCAGCCTGCTGTCAGTGCTGCGGCAGCAAGACGGCTCCTCCCAGTCCCCCGTCTACACCTCCGCCACCGAGGGACGAGGCTTCCCCCCGCAGCCGGGCGCCGAACTTGGCCCCAGCCCTGTGGCCAatcagagaggaggaagtggtggtggaggaggggtgggCTCCAGCAGTGGGCACCACCCTTTCTGGGATGGCACGCGCAGCAACCCGGCCTCGTTCCGCAATGTGCTCCAGTGCAATCTTAGCCGCTACTTCATGGAGTTCGACCGCATGCAGGACCTGGAGTTGCCGCTGGGGGCCGCCAGCATGGATGTCGGGGGAGGGGAGGGCGGCCAGGAGCAGATGCAGGAGCTGctcaacaacaacatagacccAGAGAGACCTGGGCCCTCCGTGTCCTCCCACTACCAGCCCCAGCCACCCCCACCTGCCCCTACCGAGAACAacccccctcccttctctagCGCCGCCCACTCCTCCCGGGGCCACCTGAACCGCTGCCGGGCCTGCCACAACCTGCTCACCTTCAACCACGACTCCCAACGCTGGGAGCGCACCAGCCCAGCGTCCTCCACCTCCGCTGTCTCCACGCAGGAGGGCCCCAGCTCTCCCTGGCGGCAGCCCCCCAGCCCTGCCTATGAGGAGCCCCATGCATCATCACGGAGCCGGGatccacacccccatccccaagagagggagaggagggtagcCCAACCCCCTGAGCCCAGCGAGCTACAGCCCTCCCCAGGCCCTCACGTTGCGGCCATGCCCTTCCCCACCATTGCGTCGTCCTCTGCCCAGCCCGGGGAGCAGACAGTGGGCCTGGTGTtcaaccaggagacaggccagtggGAGCGCGTCTATCGCCAGGCCGCCTCCAGCCGCTCCACCGACGCACCGTCAGAGGCCTTAAGCCAGGAAATGCCTGTGGATAACCCGGATGAGGACTCTCTGAGAAGAAGGCTGTTGgagtcctccctcctctctctctcccgctacgACATGGGAGGATCCCGAGACCACCCTATCTACCCAGACCCCGCCAGGTTGTCCCCGGCTGCGTACTATGCCCAGAGGATGATTCAGTACCTGTCAAGGCGGGATAGTATTCGCCAGCGCTCGCTGCGCTACCAGCAGAACCGGCTGAGGACACTCTCCTCCTCGTCGGACAGCCCTGCCGGCAACCCCTCGGCCGCCATTGAGAACAGCGACGTGGAGTTTGAGGAGCTAGATGATAACGGCGACAGGACGAGGCACAGAACACCGCGCAACGCCAGGATGTCTGCTCCTTCGCTGGGGCGCTTTGTTCCCCGGCGGTTCCTGTTGCCTGAGTATCTGCCCTACGCTGGGATCTTCCACGAGAGGGGACAGCCTGGCCTTGCCACTCACTCCTCTGTCAACAGAGTCTTAGCAGGTGCCTCCATCGGGGACGGCCAGTCGGCGGTGGCTAGTAACATAGCCAACACCACCTACCGGCTGCAGTGGTGGGACTTCACCAAATTCGACCTGCCTGAGATCAGCAACGCCTCTGTGAATGTGCTGGTGCCAAACTGTAAGATATACAACGACGCCAGTTGTGACATCTCAGCGGACGGGCTGCTCCTGGCCGTGTTCATACCTAGCAGCCAGCGGGGCTTCCCTGACGAGGGCATCCTGGCCGTGTACTCCCTGGCCCCTCACAACCTGGGGGAGATGCTCTACACCAAGAGATTTGGTCCCAATGCCATCTCGGTGAGCCTGTCTCCCATGGGCTGCTACGTGATGGTGGGCCTAGCATCTCGCAGGATCCTGCTACATCCCTCCACTGACCACATGGTGGCGCAAGTGTTCCGGCTGCAGCAGCCCCACGGCGGCGAGACCTCCATCAGGATGGTGTTTAATGTGGTGTACCCCATGGCTCCGGACCAGCGGCGACACGTCAGCATCAATTCAGCCAGATGGCTTCCAGACCCGGGGATGGGCCTGGCCTACGGGACCAACAAAGGAGACCTGGTCATCTGCAGGCCCGTGTTGTACCGGAGTGACGGAGAGAGCCCGGCCGAAGCGAGCACCGAGCCCATATTCACAGTCAACAGCGGTGGTGGAACCAGCAGGACCCGCGGTACAGATCGACCAGGGGCCCCCAGTCGCTCCAGCTGGAGACTTGACAGAGACATGGGTCTGATGAACGCCATTGGCCTCCAGCCCCGACACCCCGCCCCCTCGGTGACCTCACAGGGCACTCAGACGCCCATCGTGCAGCTGCAGAACGCCGAGACGCAGACAGAGATGGACCTCTCCGGGCCCAGCACCTCCCACGCTGCTGCTTATGTAGAAGCCCGTCAAGAGGTCCCGTCCACAAGCCGTGAGACCCAGGGAGGTCTGGAGCAGCCACAAACCAGCCAGGCCGAGGCCAGTGCCATGGGGGACTCTTCAACAGAAGCCGGCACCTCCACAGCCAACACTGgCGAGGCCCCAGAGTATGCCCCGGGAGAGGACGCCTTGGCGCGCATCCGCCGGCTTATCGCAGAGGGCGGCATGACGGCGGTGGTCCAGCGGGAGCAGAGCACCACCATGGCCTCCATGGGCGGCTTCGGCAACAACATTATCGTCAGCCATCGCATCCACCGCGGCTCCCAGACACGGACCGGCGCCGCAGCCTGTCGGCCCAGCAACAGTGACCCCAACCTGCCTGTCCCCGGCCACTCTACAGCCTCCATTTCCACCTCCTCCGCCTGCCCCCTCACTATCACCCAGCCACAGCCTTCCCAGACCTTGCTTCTCAGCCTGGAGAACTTGTCCGCTCCCACAGAACCAGGCCCGGTGTGGGGGCTGCCCTTTGTCTCCCAACCACAACCCCCCAGCAATGCTTCAGGTGCGGGGGCCGGACTCTCAGTGGCCATGGACATCGACAACGTGTTTGAAGTAGCCAGCCGAATGGACAATTCTGAGCCAGGCCCCTCTTCCTCCCTgatcttctcctcttcctcctcctctcgcaGGTCCTACCCTCCCAGCAGTGGCACAAACGGCAACgataacaacagcagcagcagagctagttaccCAGGTGACCCTTACAGCAGGTAGAGTGTGATTTGACCATTCTTGCTCAGGAGTGGGAGAGAATCCCCCAGAGCAGACAGTGGGTGACTGATGCTAGTGACGATGCTTTGGGCCATGAGAAGGTGTATCAGGAACCCTAATGGAACTCAGTGTGGCCCTGTCTAACAGGTGCGCTTCTCCTCAAAGCCTTATCTCACAATAAATGTTCTCAGACACTGCGGGGTCTCCAGCCCCGAACAGAAGGGACATgagccccccccaccccatcaGCTTTAGTGGCATTGTGACCCCCTCTGCATTGGTGTGCACTTACATTTGCACTTAAAATGGACCTTATCTGTATGATCATTCCATGTCAGAAAGGGCTTTTACTTGAATTGTGAGGTTTTTTTCAGTCCTTCTCTTCGCATAGGCGTGACTGATAGACAAGGTTACTCCATTCAAAGTGCCATGTAAGGGTAATTGTAAAGAACAACTAAAAAACAGAGTGTAGTGTTCTGGTGCCATGTGATTGAATTTGACATGAATTAGTGTGTTTGCTATATTTTGAATCCTCTTTTTTTTGGGACCATGTTATAGGACGTGTATTTGTAATGTGATGATAATGcatagcaggaaaataatcctattGTTGTATGAATCATGATATGATGTGTGTGGCATGACTAAAGCCATGCCTTTCAAGAGAGAATCTGCAGCTGCCTGCTTTCATTATAGATTATGTCAGAGGGGTCCCCCCAAAAGGATCATGGTCATATTATGAGTCCCCAAGTGTACAGAGCATCTGATTTGATGGTACAAGTCTAAGCCCCTTATTGCTTCATGTTCAAACAGAATACAGTGGACAAAATGGTGGATGTGATGTTTCAATGTCTAGTCAATCATTTCTGACTGTATTGATACTGTAGTATTGTTCTACTGCATGTTTTCAATCATGCTGCATCGTTTCTGAAGAAAAAAGGGAACGCCATCGGTACAAAAGTATTGTGAAATATGGACAAATCGGCATTGAGGGAGCTAAAGAGTTTTGGGGGGAACTAACTCGCACACCTGTTTGGGGAGCGTTAGTCAGCTCTCTAGACAGGCTTGTGTCACGCTAAGAGGCAGCACCATCATTCCTCTTCTGTTGCACTACAGTGACTGGGTTTAGTGCCAAGAGGCATGCAGTGAGGCCTGGGTCAGGATTTCTTTACCATCTGGTCCCTGGTCACCCATCCCACAAACGTCCACCATCCCCCCCTAAATATGTGATGTAGACCAAGACCAGAGCCTCCTGTCTCCTGCACTCACCACTGGTGCTCCAGGGACACTGTGAGAGCTGAGAAGTTACCACTAGGATTCAGTGAAACAAACCTGACTGTTGACTTGTTACGCCCAGTGACCCTTCCCACAAAGACTGAGGAGTAGCAGGCAGGGGGCTAGCTGGATTGGCTCAGCTGTATCTGTCTGTCAACAGGGGGAGGGTCTTCACTGAGCTTCTTTTCAGTTAAATCTCCAGCACAAACACACCCAGCTTAGGAAGCACTGAGGTGGAGctggtccgtgtgtgtgtgtgtgtatgcttgtctctgtgtatgcgtgtgcagttgtaagtgtgtgtgggggtggtgtATGTTTATTGGCTCTGCAAAATGTAGGCATTCTGCAGCGGAAAAACAGGAGAGCAAGTTTGCCTTTTGCCTATAACCGTATGTGGGTGGGCCAGAAGGCTTGTATATGTAGCATCTCTTAGTCAAAGTTACTTTGCCCTAATGGTGTGGTTTGTCACTTGGGGTACGTCGGGGTGAGAGAGCTTTTGATTATAATCTCAATCAGCCCCGTGCTGAACCaggaaattgattttttttttaaacttgaatTATCGATTACCATTTAGATCGAGTTTTGTACTGTAATGTCTTCAGGGGTGTGCCTGGCCTATTGTGACAGGCAGAGTGTCCTTAGCATATCATTTCACTAAAGCCCCCCTGACCACGTCGCGTGCTTACAGACAAGAAAAATAAATGCCCTGCACagtataactttttttttttaaacccataATGCTTAGCTATTTACATTCGCTTTGTAGGGTTATTATATTGTTAGACCtctgagtagagagagaaagagcgaatgGAGCAAGTGCCCCGATTGGTTGTTTTTTGAGCTGTGCAGCGAGTCCTGAGTGCGACTCCAAGCAAACTGTTTACTGCATGTATGAAAACTGCTACAACTGTCTTACTGATTAGAAGAAAGTCAAATTGCCTGGCAGGTAAAAAAGAAACAAACTATCTGAATGGTCCTCCTGGCTTTACTTGATTAATGAAGATTTTAAAAACCGTTTGTCGGCTGTTCATGTGTCTGCTTTGTGTGAAAGAGCGCTGTCTCCCATATGTCCCTCACCCTGAATGATACACATACTGTAGGTCCACAACTACACTTTTAACAATGCAAATCAATGGTATACAAAGTCTCACCTTATATTACAAAACTTCTATATCAAACTATCAAGTTTGTTCACTTTTTTGGCTTTGACTTTTCTGTGATGTAATTAAAAAGAGATTTGTTGACATAAAGATGAAAAATGTAACAAGTATGTTCTGTGAAGAGATGGCAATCTTATTGGTTCTTAATGGAAAGCtacagctactgtaaattgtaTACAGTTGCTATGACCTGCGGTATTGAACATCTTAAAGGCCCAAAGCAGCTGTTTTTATACTtgtttctgggtaacaattttgtaccttactgtaatagatttccattaaaaagggCAAAAATAGCTTTATAGCAAAAAAAAGATTTCTCAAACAAGAATTTTGCAAGGACTGTCTGGGAATGGTGGGAGGGGACAACTGAAAACCtgatgttattggcagagaggtttgaaacttTTTTTGTAATTGGtatattaaagctgcaatatgtaacattTTGGGCGACCCAactaaattcacatagaaatgtgagttatagatctgtctttCTCATTTAAAGCAAGTCTACGAAGTGgtatatctgttctatgtgttctatttTTATGCTTCTTGGGTTTCggtactttcggttttgtacaccagcttcaaacagatgaaaatacaatttctggttattgaaaatatattttacagtggtttatatggtacaatgattctctacactatgcaTTGCTTGTTTTTTCACATATGGCACACTGATATGGCAAACTATTAGAATATTTGCAACCAGAAAATGGCACAGCGATTTCTGCATCTTGCACCATTAACCAATTTACTGCATGGCGATGTCAACATTGAAAGTCGAAACTcccgcccatgcaaacctgctcaTTAGATGGTCCTGTCTAGATTgtgttttcaaccagcaactatcaagAAATAACACTGATTAAAAAAAAGTGTACCGTATATACTTTTCCGGTGTTAGTTTCACTGtatgatacaaaacacaggaaaaaaaTAATTTTGACGGCACTGGGTCTTAAAGTAACCAAATGTCATCTATACGGTTATTGTATGTGTTACCAGCAGTGAACAAATCCTATTCTTAAGGTGAAATATAATTGGTTTTCTACACATATGCAAATAACAGTGGTTTGACTTCTGTGGAATGGAAGAAATTAAAGTGTATTTAACATAGTGGTAGTATAAACTAATTGGATACATGACACTGCATTTAGACACTAATGCTTTGTCAAACAAATCATACTCCAGACTCCCAATATACATAGGTGTTTTTGAATGTTTAGTATAAGTTGGGAATACTGCTGATTCATCTTAACAAGTGGAGTTGTCCCTCTGTACTTACTTGTGTTTGGCATGTAATTTCTTTAATTAATATAGATCCAATAATGGATCCTTGTGGAACACCACGTTTGATCTCAAGAGGGGGGAGTTTATTCCTTTTAAAGTGACAGGTTGCGTTCTTCCTTTTCCTTTTAAGAATGCAGATAATGGTCCCCATGTACTTATTTGGTTTTATATTATGAATGTCATGTTTTACACTCCATATTCTTTGTTAAGGCACTTGTGGGGACACCTGTGGTATGCAGTATGTGTGAAACATACAGATACAAACACAGTTTTGCCCACTCATACAATATATTTTGCTTGACAGTGATCACAGCATTGTCCCAATCATGTTTAATGTCATCCTTGGTTTTTATGAATTTATATCTTTCACTACTTTGCCCCTTTAGGGCCACCACATTTCATAGTCTCTGAGCTGTTTGTGAGCCTTATTTTGTTGTGATATTTTTTAAACCATGTGAGGCAGAGTCTTTGGCAAAATGGTTTAGTTAATTTGAGGGAAAGCGGTAGAGGTTTTGGTCGGTGCCTGTACGGTTCACACTAGTTACTGCCACTACTTATTCTAAATCTACTAAAACTCTTGGCGCTAGTATGTAGCCAAACAGTCACTTGTTGATTATACTAATCAATTACAAATTATTGGTCTTGTTGCTTCCCTTGTTAGTGTACAATAGTCTCTGGTCTAGCCTCATGATATTCTTCCTATGTTTGGAAGGTTGATTTTATATAGATTTGAATGTAGTGAATTTTTGCCCAACACATTTCTGTTATAAATTACACCTGTGGTGCTTCAGTCAGCTACTTGTTCAACTGCTTTCACAGAAGACCTATGCTGCATATTATAACTAGGAACAAACTAGGGCTGTTTGAAAAAGAAGTATCAGGCATGACTTCAGTATGAAATTGTCGAGGGGGCTAATGTTTAGGGTGTGTTGCTGTGTCACAATACTTTAAAAACATACTTTCCTTATCCTCTTTCATGACCACTGACCAGTGAAAGGACTCAATAGGTTTTCACTATACTGCTGTGCTCTCATCTATCGAGTCCTCAGGTCAGTAGTGGTGAAGAAAAGGATACCAGGTAAGGTATTTACAGTATGCGTGTGACTTGGGATATAGTCTTGACTGCTATGTCTCTTCCCCTAAACTGTTATCAACGGTCTCTCATGTTTTAGAGTGCTGATGTGATGAAGATTTTTTGTTCTTTTAAGCTAAATTAAGATTATAGTAAAAATCCAACAAGTTCTATATCATATATAGGAACACCAAAGATCCTATGTAATGTTGACGATGAAAAAAGGCAAATAAACAATAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66362 lncRNA downstream 10762 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA downstream 10762 54295267 ~ 54297288 (-) True G59721
TU66360 lncRNA downstream 48137 54255010 ~ 54259913 (-) True G59720
TU66254 lncRNA downstream 84225 54191982 ~ 54223825 (-) False LOC110525336
TU66446 lncRNA upstream 40017 54394044 ~ 54458919 (-) True G59794
TU66618 lncRNA upstream 345055 54699082 ~ 54705581 (-) True G59956
TU66619 lncRNA upstream 350603 54704630 ~ 54711130 (-) True G59957
TU66621 lncRNA upstream 363440 54717467 ~ 54717739 (-) True G59959
TU66627 lncRNA upstream 366751 54720778 ~ 54721359 (-) True G59965
XM_036980399.1 mRNA downstream 84064 54113139 ~ 54223986 (-) False LOC110525336
XM_036980458.1 mRNA upstream 19084 54373111 ~ 54382652 (-) False LOC110525376
XM_021605431.2 mRNA upstream 19084 54373111 ~ 54382667 (-) False LOC110525376
XM_036980449.1 mRNA upstream 19084 54373111 ~ 54382667 (-) True LOC110525376
XM_021605457.2 mRNA upstream 110380 54464407 ~ 54503021 (-) True nat10
XM_036980561.1 mRNA upstream 150669 54504696 ~ 54537346 (-) False caprin1b
TU65545 other downstream 511036 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 545154 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 719280 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 881734 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 969663 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 375104 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 716365 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 796214 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 839270 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 849390 55203417 ~ 55203742 (-) True G60624

Expression Profile