RNA id: TU66260


Basic Information

Item Value
RNA id TU66260
length 583
lncRNA type intronic
GC content 0.43
exon number 1
gene id G59625
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54185486 ~ 54186068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagccaccctttgccttgatgacagctttgcacactcttggcattctctcaacctgcttcatgaggtagtcatctggaatgcacttcaattgatatgtgtgccttgttaaaagtttatttgtgtaatttctttccttaatgcgcattagccaatcagttgtgttgtgacaaggtagggtggtagaagatggccctatttggtgaaagatcaagtccacattatggcaagaacagctcaaataagcaaagagaaacgacagtccaccaTTTCTTTAAGACATAAAGAACATTTCAGTCACATAAGCCATCaggcgctataatgaaactggctctcttgaggaccgccaccggaatggaagacccagagttacctctgcggcagaggataagttcattcgttACCAGCCTCAAagtttcagcccaaataaatgcttcacagagttcaagtaaccgacacatctcaacatcaactgttcagaggagactgtgtgaattaggccttcatgtttgaattgcagcaaagaaaccactactaaagaaaaccaataagaagagacttgcttgggccaagaaacacgagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66308 lncRNA downstream 3856 54181174 ~ 54181630 (-) True G59672
TU66309 lncRNA downstream 4912 54180086 ~ 54180574 (-) True G59673
TU66300 lncRNA downstream 17243 54167968 ~ 54168243 (-) True G59664
TU66298 lncRNA downstream 20160 54165059 ~ 54165326 (-) True G59662
TU66257 lncRNA downstream 25497 54159684 ~ 54159989 (-) True G59622
TU66254 lncRNA upstream 5914 54191982 ~ 54223825 (-) False LOC110525336
TU66253 lncRNA upstream 6193 54192261 ~ 54223825 (-) True LOC110525336
TU66360 lncRNA upstream 68942 54255010 ~ 54259913 (-) True G59720
TU66362 lncRNA upstream 93164 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA upstream 109199 54295267 ~ 54297288 (-) True G59721
XM_021605344.2 mRNA downstream 165936 53989527 ~ 54019550 (-) True LOC110525320
XR_005051434.1 mRNA downstream 311250 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 311461 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 311461 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 317396 53853860 ~ 53868090 (-) True LOC110525263
XR_005052162.1 mRNA upstream 5912 54191980 ~ 54223870 (-) False LOC110525336
XM_021605396.2 mRNA upstream 121982 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA upstream 121982 54308050 ~ 54354009 (-) False LOC110525355
XM_021605410.2 mRNA upstream 121982 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA upstream 127707 54313775 ~ 54354010 (-) True LOC110525355
TU65545 other downstream 388472 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 422590 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 596716 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 759170 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 847099 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 543063 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 884324 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 964173 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1007229 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1017349 55203417 ~ 55203742 (-) True G60624

Expression Profile