RNA id: TU66309


Basic Information

Item Value
RNA id TU66309
length 489
lncRNA type intronic
GC content 0.38
exon number 1
gene id G59673
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54180086 ~ 54180574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgttcAATTATAACGGCTGTCATGGCGAACTGCAATATtagtgtttgtttttttcatctcaagacttgagtgtcatttgcagtaaagtctaggcaacaaataacattggattgctttctttacattttttagctgtgagttaggttcaaattaaccactttttttattttacacacgGAGAAtgatcatgtagatcatattctttgttgtttaGTTACTTAAAACCTGCATTTCCCCCTAGcagggatttttttgttgttgcatgttTCAATGCCCTTGGCAGTTTGCATCCCTGAACATGGCGGCGCACACAAACAAATTAATATTGTGGtttctgtcagccgagagttGCCTAAATATGACTGCTTGTGATATGTCAAtatttcctcagttagcgctaggactaCATTACATTGATCGGTTTGGATGATTATGTATGCTGTtcctacttctgtgaatgtctgaacattgcatccaaaaataaacttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66300 lncRNA downstream 11843 54167968 ~ 54168243 (-) True G59664
TU66298 lncRNA downstream 14760 54165059 ~ 54165326 (-) True G59662
TU66257 lncRNA downstream 20097 54159684 ~ 54159989 (-) True G59622
TU66296 lncRNA downstream 21448 54158418 ~ 54158638 (-) True G59660
TU66292 lncRNA downstream 25671 54154130 ~ 54154415 (-) True G59656
TU66308 lncRNA upstream 600 54181174 ~ 54181630 (-) True G59672
TU66260 lncRNA upstream 4912 54185486 ~ 54186068 (-) True G59625
TU66254 lncRNA upstream 11408 54191982 ~ 54223825 (-) False LOC110525336
TU66253 lncRNA upstream 11687 54192261 ~ 54223825 (-) True LOC110525336
TU66360 lncRNA upstream 74436 54255010 ~ 54259913 (-) True G59720
XM_021605344.2 mRNA downstream 160536 53989527 ~ 54019550 (-) True LOC110525320
XR_005051434.1 mRNA downstream 305850 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 306061 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 306061 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 311996 53853860 ~ 53868090 (-) True LOC110525263
XR_005052162.1 mRNA upstream 11406 54191980 ~ 54223870 (-) False LOC110525336
XM_021605396.2 mRNA upstream 127476 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA upstream 127476 54308050 ~ 54354009 (-) False LOC110525355
XM_021605410.2 mRNA upstream 127476 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA upstream 133201 54313775 ~ 54354010 (-) True LOC110525355
TU65545 other downstream 383072 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 417190 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 591316 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 753770 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 841699 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 548557 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 889818 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 969667 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1012723 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1022843 55203417 ~ 55203742 (-) True G60624

Expression Profile