RNA id: TU66300


Basic Information

Item Value
RNA id TU66300
length 276
lncRNA type intronic
GC content 0.43
exon number 1
gene id G59664
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54167968 ~ 54168243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGATTCTCACCCAAAAGGGCAAGTCATGACACATCCTTACCCCCTTGCAACAGatgtgggatacacacacacactcaacccctttTCCCCCATTCTCAACCATAAGCTCAGATGCTCAAAGGTTGTTACATCCCAGAGCCTAACTCAGGAAAGGACCTGCTTTATGAATGAATATACAGTTACAGCTGTTTGAGAAAGAATGCAAGATTGAGCAAAAATTTGAAAAAATGTGCCATGGTCAAGTCCAAGGTGATGGAGATCAGATCCACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66298 lncRNA downstream 2642 54165059 ~ 54165326 (-) True G59662
TU66257 lncRNA downstream 7979 54159684 ~ 54159989 (-) True G59622
TU66296 lncRNA downstream 9330 54158418 ~ 54158638 (-) True G59660
TU66292 lncRNA downstream 13553 54154130 ~ 54154415 (-) True G59656
TU66291 lncRNA downstream 13945 54153819 ~ 54154023 (-) True G59655
TU66309 lncRNA upstream 11843 54180086 ~ 54180574 (-) True G59673
TU66308 lncRNA upstream 12931 54181174 ~ 54181630 (-) True G59672
TU66260 lncRNA upstream 17243 54185486 ~ 54186068 (-) True G59625
TU66254 lncRNA upstream 23739 54191982 ~ 54223825 (-) False LOC110525336
TU66253 lncRNA upstream 24018 54192261 ~ 54223825 (-) True LOC110525336
XM_021605344.2 mRNA downstream 148418 53989527 ~ 54019550 (-) True LOC110525320
XR_005051434.1 mRNA downstream 293732 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 293943 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 293943 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 299878 53853860 ~ 53868090 (-) True LOC110525263
XR_005052162.1 mRNA upstream 23737 54191980 ~ 54223870 (-) False LOC110525336
XM_021605396.2 mRNA upstream 139807 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA upstream 139807 54308050 ~ 54354009 (-) False LOC110525355
XM_021605410.2 mRNA upstream 139807 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA upstream 145532 54313775 ~ 54354010 (-) True LOC110525355
TU65545 other downstream 370954 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 405072 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 579198 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 741652 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 829581 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 560888 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 902149 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 981998 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1025054 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1035174 55203417 ~ 55203742 (-) True G60624

Expression Profile