RNA id: XM_036980882.1


Basic Information

Item Value
RNA id XM_036980882.1
length 5938
RNA type mRNA
GC content 0.45
exon number 18
gene id fam160b1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58808370 ~ 58838199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGGCGCGctctagcatgtatttgcatatttccgttagggaaagCCTATTATGTGAAGTGCGCCGTGTGCAATACCTCAATTCGCCCTTGCGTTCCTTCTAAAGAAAGCAAAAGGCAAAGTCTACAacacttagtccactctgttcgtaaCAGATTATAGTTTTgaaaacagaaaactgtattgagatcaactgTTTCATCGATGACAAAATTAGAGGAAtatcggccaaaatccatctcgctccatcttctcccactgtcgTCCACTGGGCTTCCTATCATCACCATATTTgttaGATCATTATATGAAAACTCCAATCTGGATCGCAGCGCTAACAACAGGAAGAAGATAGAGGAATTCTCTAGGTCTTCTCGTGACAAACTGGTCCAGTCGAAGAACAAAATGTTCTCCAAATTTACATCGATTCTACAGCACGCAGTCGAGGCGCTTGCACCTTCACTGCCCTTGCAGGAGGACTTTGTGTATCACTGGAAAGCCATCACAcattactacatagagacatcagATGACAAAGCACCTGTGACAGACACCAACATCCCGTCCCATCTGGAGCAGATGCTGGACATCCTGACGCAggaggagtcagagagagagtctggaGAGACTGGGCCCTGCATGGAGTACCTGCTGCACCACAAGATCCTAGAGACCCTCTTCACCCTGGGCAAGGCCGACTGTCCTCCGGGAATGAAGCAGCAGGTTCTGAGTTTTTACACCAAGCTGCTAGGACGCATTCACCAGCCTCTTTTGCCCCACATCAATGTCCATAGACCTGTACAGAAACTCATCCGTCTGTGTGGAGAGATCCTGGCTGCTCCCACGGAGAACGAGGAGATCCAGTTCCTCTGCATTGTCTGTGCCAAACTAAAGCAGGACCCCTACCTCGTTAACTTCTTCCTGGAGAATAAAGTGAAGAGGCCTGACCCAAAGAGGCCTGGtgtagagggggttagggaggACTTGGCTTCACCAGACACAGGTCAGCCCCAGGCAGAGGGACAGGCAGCTGAATCACCTGAGGAGCCCAAGTCTGCTGCTGCCCagtccaacaacaacaactacaacataGTCACGTCTCTCCTCAACCTCACCAAGAGTCCGgaTGGCAGGATAGTGGTGAAGGCATGCGAGGGCCTCATGCTGCTGGTCAGTCTGCCTGAGCCGGCCGCGGCCAAGTGTCTGACGGAGAACACTGAGCTCTGTGAACTCTTGACTGACAGACTGTCAGCATTCTACAAGGCTCTCCCCATGTCCATGGATCCCCTGGACATTGAGACAGTGGAGTCTGTCAACTGGGGACTGGATGTGTATAACATGAAGGATGATGCTGCCATCTTCACTGGGAAGCGAGCACTCATCTCCTTCCTATCTTGGCTCGATTACTGCGACCAGCTCATCAAAGAGGCTCAGAAGACGGCGGCTGCAGTGTTGGCTAAAGCAGTGAGAGAGAGGTTCTTTGTGGCGGTCATGGAGCCCCAGCTGATGCAGACGTCGGAGGTGGGCATCCTGACCTCCACGGCGTTGCTTAACAGGATCATCCGCCAGGTGACCTCGGAGGCCTTGCTGCAGGACATGGTCTACTTCCTCCTAGGGGAGGAGAAAGGACCAGAGACCCTAGCCAGCATTGCCCAAAACCCCCTCCGACACAGACTCATAGAGCACTGTGACCACCTGTCAGATGAGATCAGCATCATGACCCTGCGTCTGTTTGAGCAGCTGATCCAGAAGCCCAACCAGCACATCCTCCACAGTCTGATGCTACGCAGCCTGGAGGAGAGGAACTACCTGGAGAACAAGCCCCAGGAGGAGAGGGAGCCCGTGGAGAACGGCCAGCCCCACGACTTCATAGACCTTGAAGAGGACCCTCTGTTTGTCGACGACTTCTCTCCAGAGAACAGGTTGTCCAGCCCTGATTGGTTGAGCAACTCCCCAACACACAGTCCTTACCACGCTAAGCCTGATGGAAAGACAGAGGTCCACAAGATTGTAAACAGTTTCCTGTGTTTGGTGCCTGATGAAGCCAAATCCTCGTCTCATGTGGAGGGAACGGGTTATGACACCTACCTAAGAGACGCACACAGACAGTTCAGGGACTACTGTGGGATCTGTCAGAGATGGGACTGGCGCGGCACCCCCAAGGCCATGGAGAAGTGTGACCTGGACAGTCCCTTCTTCGAGGGCCACTTCCTCAAAGTCCTCTTCGACAGAATGGGCCGTATTTTGGATCAGCCTTATGATGTGAACCTGCATGTGACGTCAGTGCTATCCAAGCTGTCTCTGTTACCCCACCCACACATTCATGAGTACCTGCTGGATCCCTACATCAACCTGGGCCCCGGCTGCAGGTCCCTCTTCTCCGTCATCGTCAGGGTGGTTGGGGACCTCATGTTGAGGATTCAGCGCATCCCAGACTTCACACCCAAACTCCTGCTGGTAAGAAAGAGACTGCTTGGTCTCGAACCAGAGGGTCTGAACATCGACCACATGACCCTGCTGGAGGGGGTGATTGTACTGGAGGAGTTCTGCAAGGAGCTGGCTGCCATTGCCTTTGTCAAGTTCCACGCGTCTGCCTCCACCTCCCCCTAATCCAACCGGCCAGACAGGCCAGGActggggtggggggaggggagtGCGGGCAGGGAGAGGACAGGATCAACAAACGACTGGTTACTTTCCACTGGTCATCCCTAAAATCGATTGTGCCCCAAAGACATACTGTAAGCAGGATATGTTTCATCAAATGTCTTGGGACTACAGATAAAGCATTTTGCCCCATGCCCTAACCAGAACAACAGTAAGGCTGGCAATCTGGGGCTAGAGGCTTTCAGGGTGAGGAAgaggatgtgtggatggatgcgGTAGGAGAGGGGACATTCTCAAGATGGTTTGAGCTGGGCAAGGCCTGCAGAGTCCctgcgtgctctctctctctctctctcgcctttctGTCTTTCTCGCCAACCTAAACAAATATGATCACCCCTTCACTATGTGTGTCATAGGGAGAGAAATGTGTTTTCTGTATGTGTGTAGTAATTTAATTTTTTTTCATACTCTGCTGTTTGTAAGCGTCAATGCCTTAGTGTTGGATTATTACGCCTTTTCAGTCACTCTTTCAGGAGGTTTGTTTCCTAGTGAAACATTTTATCTTTAGCCCACATCTCTAATATATTCTTCTTCTGTCAGATTATCAATGTCAAATCACAAAAAATCTGTGGACAAGATAGCCCCTCTAATTAGCACCCATATTGCTTACCAAAATCAGGTAATTCACCCGATTCGTTAAAAAGAAAAGTACATACAATACAATGTAAAATGTTCTTatttaacaaacaaaaaatgtatgGAGAAGTTCACTGTAGTGTCTGAGATAATAAGATACTAGTCACGGTGTGGCAGAAGTGGAAAGTCCCTGTATTTATTTTCACAGTTTCTTTCAGGTTGCCTTTTTAACTGTCAGATATGCATttttaaagaaagaaagaaccaTTTTTAACCAATTTAATAGACAAGGTAGACAAGGAACTCTCAATGCAACTTAATTTGCAGAAAATGTGTCAAGTTTTGAATTGTCCCTGACTAGTAAACTTCACCGTGGAGATGTTCGTGTTAACATTGCTCAGGCTACCTACCTAACCATGTCAATGGTTGTGTATTTCTCATTGTTTGCACCGTCAACCTCACTAGCAATGGGATAACATTATAGAGTAATGTGACATCACATTGTGTAGAATGTGGATCCTGAAAAACAAACTGGATTTGGACATGGACTTCTATGTACATTTGCACTCATTACATATATCAGAATCTTTGCTTTCTTTTTGGACCTTCGTCGGCTTTTGAGGAAAGTGACGCCGCATTTCTTCTTCTTTTGCCTCTGTGACAATGTTATCGTTTAATACAGTAATCATTATTGCAGTTTCAAAATGTTCTCTGCTACATTGTACACTTATGTTGTCTTTTAATCTGTACTAGTGTAGTGGCATGGCCATCTTTCAGCGATCTTACATGTTATTCATTACTTGTTTATTTATAGGAGGTAATCTTAATTTTGGGGTTGGGAGGTCCTCAAAGTGGTCCTATTACATAAATAATTCTGTCTTGGTTAGCTTACATTGTGGcatgtaggcctacatgtaaATGTATGGGAACACAGTACATGAATTTGATATGTTCCTTCGTAAGCTATCATTTTATAAATGCAATTGGATACACACAGTGTTTCCATAAGAGGTATTTCATTTACCAATAGTATTGTTTTCCAGCATGATCTTTGATGACGCAGAGGAAAGGACACTTCATTATTTTAATCGGTCTGAATTAGGGAACTACACGACAAAACCGGTGCTGGGGATGTGTTGCTTGCCTGAACGCTTTGGGTTTGTACATGGATggtgcccagtgtgtgtgtggttgtgttataggGGAtgagtgtgtcggtgtgtgtctgtgtgaatgctTGCTGCTTGCAGGCTGGATGAATCTCCATGAGGTCAGGAGTTTGAAATACTCCACATTAGCCGGGACACTGAACTTAGTGGCTAGAGCTGTTGTTCCTGCTAAGTTGACAGAGCAAGTTGGCTTCCCTATACAGCACCTGGGGGAGTATGTCACAAAATAGGATCcttgttagccagctaacttgttTGAATGTTATCTGGATAAATCTCTAGGAAGATATGGACACCTGATTGATTCCACGAACAACCCATTTGACCGTTTTAGCTTTATAAATGAACCAGATAATACGTTATTTCATTTTGATTAAAGTTAGCTGTCTACCTTGGTTGTCCTGcattgtagtatacccctctggcCTAATTATGCAAACGTTTGCATGAAATCAGATTTGCACATCGTCTTCATTCTTGTTCATATGTTGTACATATACCAATACTAAAAagcttttttagttttttttttttttttttttgtatcatgAACTCCCCAAAAAATATTAGGATGCACCTTTCAGGAGTGACTTGTCTACTTTAATggatgaaaaacatttttttattcttAATCATGCACATTTTGTGATCAACCTTTCTGTACCTGTGTATATAGGCTATACGTGTACAATAGTAATATTTGCCAGGTGTAAATGCATGCATATCATTTATTGTAATTATGAAAGCAGCATCTCTCTCCTAGCCTAGGACCAAATCTGTTTGTGCCTTTTGGACCAACTCCTATGGCCATTGTCACActaatgaccataggagttgggaagactgcacaaacagatctgtgacCAGGCTCCCTTCCCATCCATGATGATTTCTTAGCAGTCAGCACTTTGCTCCTCTTCTGAAGACACTGACAAGGAAATACAATGATGCCTTACTTCACATTGTGACATTAATGGTTTCACTGCTTGGCTTGGGTTTGTTTGTCACACATTGGATGCTCTATTTGTGAAAGGCATACTGTATTTCCTTGTCTGGGTGCAAGAGTCTAGTATTCAAAAAATCTGATGCCAACTTAGTTTATTTTCCTGTTCTGTATCCGCTTAGACCAATCACTGTATATCTTTGGTAAAACATGTTTGCTGCATTTAATTGTTAACCTAAAACTGGGTGTGAAATGGGTTACCTTTTTGGACTTTTTCTTGACCAGTATGATTTATTCTGTGATTAGTGCAATGGTATTTAAATGTAATATTAAGTTGCATGCTCATTCCTCATCACGCCTCTTGATGCTCATGATCAGTGTCTCGAAAGTAACTATCGCCGACAGGGTGGGTTCTTTTCTGCAGTTTCTCTCATACACTCAGGGGCATCACGTTTTCATTCTCATCTGCCATTTCTGGTTTATGCGTGCTACTTTTCGGTGTGTGTGAGAAATCATACAGGACATTATGGCTTTGTTTAACATCTTCCGTCCCCAATAAAAATACAGCTTTATTCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71294 lncRNA upstream 37336 58714329 ~ 58771034 (+) True G64347
TU71292 lncRNA upstream 94854 58713247 ~ 58713516 (+) True G64346
TU71291 lncRNA upstream 96422 58711732 ~ 58711948 (+) True G64345
TU71288 lncRNA upstream 103982 58704178 ~ 58704388 (+) True G64342
TU71287 lncRNA upstream 105972 58702155 ~ 58702398 (+) True G64341
TU71349 lncRNA downstream 1939 58840138 ~ 58840812 (+) True G64394
TU71352 lncRNA downstream 2960 58841159 ~ 58843049 (+) True G64397
TU71397 lncRNA downstream 20629 58858828 ~ 58862006 (+) True G64440
TU71537 lncRNA downstream 209345 59047544 ~ 59048259 (+) True G64577
TU71611 lncRNA downstream 374242 59212441 ~ 59213818 (+) False G64645
XR_005052202.1 mRNA upstream 844547 57961716 ~ 57963823 (+) True LOC110525578
XM_021605791.2 mRNA upstream 870382 57806134 ~ 57937988 (+) False wdr11
XM_036989719.1 mRNA upstream 1042972 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA upstream 1086345 57694498 ~ 57722025 (+) True LOC118964920
XM_036980732.1 mRNA upstream 1745519 57035608 ~ 57062851 (+) False vsir
trnaa-ugc mRNA downstream 223608 59061807 ~ 59061880 (+) True trnaa-ugc
XR_002473818.2 mRNA downstream 371807 59210006 ~ 59212175 (+) True LOC110525756
XM_021606181.2 mRNA downstream 446125 59284324 ~ 59299682 (+) False erlin1
XM_021606193.2 mRNA downstream 449656 59287855 ~ 59299682 (+) True erlin1
XM_021606217.2 mRNA downstream 502340 59340539 ~ 59342276 (+) True si:ch211-217g15.3
TU71284 other upstream 107991 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 142464 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 220785 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 585240 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 585518 58221522 ~ 58222852 (+) False G63959
TU72488 other downstream 486437 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 1103287 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 2476675 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 2891566 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 4436764 63274963 ~ 63275296 (+) True G70011

Expression Profile