RNA id: TU71611


Basic Information

Item Value
RNA id TU71611
length 1280
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G64645
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59212441 ~ 59234565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTGTTTTAGACCAACTGAAATGTGTTTATTAGCCAATATCTACAGGCTACACCTGCATCACTTTAAAATGCATTATTTAAATATGAATCATTTgtaaaacagccataaaaatcACTAATGACTCAAGAGGCTTTGACACGTTTACAAAGTGTACAGAGAACTTTACACTTTTACTGTGCGCTTTAAGGTTAAGGAATCTGTTTGGTTTTACAGCAACACTACCCTGCAACAACACTTCTCCGCTTCAATAAGCCTCCAGTCACAATAAAACATCAATCAATGAAAACAATGATCAAATCTAAACCACAATGACACCGCCTATCTAATGCAAACTAATTCTATGCGCAGTGTTCACCCATCCGTAACTAACCCATTAACCATGTCCCTAACCTGTTACCTAATCCTGACTCACTAACTTGGCTTTAGCTCGGTCTCCAAGGAGAAGACTGGACAGCAGTCGGATTCCAGCAGCATCCTGCAGTGTGTGTAAACATGACAGTTTATTGAGAGGCTGATAGTTAACTGTGAATCGGCAGTATTACGTTGGTACCTAAGGTCTAACTGTGTTTACAGAGGGCAGTAGACTTCAGCAGTCCTTAGGGAGGGCAGTTGAACATCAGTATAAACAGATACTGCTGTATCAGGCAGTGTGGCCCGAGAGCATCCCCTAGCGTAGGACAAGAAGAATAGGCACATAAGTCTGGTTGCAGAAAGACAAAGGAAGAAGGGATGAAAGCAATGACAGATATATGGATGGATTGGATGAAGGCATGGATGGATGgttgaaagaaaaaaaaggacAGGGGGGGACCTGGTTTCATTCAGTTGGAAGGTAAGGGTGgatgggttaggggtaggggtaagAGGTCAGCAATTAAGGTTACAGGTCATCAGTGGAAGTCTGGTTTTTCGGGGAAGGTGCATCCTGCTCGTCTGATGATGACGTTGGCAGCGTAGTGTCCTGCTTTCACACACTGTTCCAACTCCTTGTCCTGGACCAACTCTGACAGGAATCCTCCTACAAAGGCATCTCCGGCTCCATTTGTGTCCACAATGTCCTTCTGGTCAATCTTCAGCACTGGGAACGTCTCCACCTTGTCacctccttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaataagggTTGAAAATGGCaaagcaaaacacacacacacacggtatatGGGTTGAAAATGGCAAATTTGGGCACTAATAGGCACCTTAATTGGaatgcagtggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71537 lncRNA upstream 164182 59047544 ~ 59048259 (+) True G64577
TU71397 lncRNA upstream 350435 58858828 ~ 58862006 (+) True G64440
TU71352 lncRNA upstream 369392 58841159 ~ 58843049 (+) True G64397
TU71349 lncRNA upstream 371629 58840138 ~ 58840812 (+) True G64394
TU71294 lncRNA upstream 441407 58714329 ~ 58771034 (+) True G64347
TU71688 lncRNA downstream 58393 59272211 ~ 59272491 (+) True G64716
TU71690 lncRNA downstream 61427 59275245 ~ 59280313 (+) True G64718
TU72476 lncRNA downstream 90948 59304766 ~ 59304983 (+) True G65432
TU72487 lncRNA downstream 106986 59320804 ~ 59321015 (+) True G65441
TU72492 lncRNA downstream 113838 59327656 ~ 59327869 (+) True G65446
XR_002473818.2 mRNA upstream 266 59210006 ~ 59212175 (+) True LOC110525756
trnaa-ugc mRNA upstream 150561 59061807 ~ 59061880 (+) True trnaa-ugc
XM_036980882.1 mRNA upstream 374242 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA upstream 374242 58808684 ~ 58838199 (+) True fam160b1
XR_005052202.1 mRNA upstream 1248618 57961716 ~ 57963823 (+) True LOC110525578
XM_021606181.2 mRNA downstream 70506 59284324 ~ 59299682 (+) False erlin1
XM_021606193.2 mRNA downstream 74037 59287855 ~ 59299682 (+) True erlin1
XM_021606217.2 mRNA downstream 126721 59340539 ~ 59342276 (+) True si:ch211-217g15.3
NM_001281351.1 mRNA downstream 269663 59483481 ~ 59485882 (+) True cxcf1a
NM_001281354.1 mRNA downstream 375846 59589664 ~ 59628254 (+) False cxcl12a
TU71284 other upstream 512062 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 546535 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 624856 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 989311 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 989589 58221522 ~ 58222852 (+) False G63959
TU72488 other downstream 110818 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 727668 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 2101056 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 2515947 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 4061145 63274963 ~ 63275296 (+) True G70011

Expression Profile