RNA id: XM_021608175.2


Basic Information

Item Value
RNA id XM_021608175.2
length 2789
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110527002
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65021203 ~ 65041610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTCACCTTTTCTATAGTGCCAATGCAAACTAGGCGAGAGACCGAGAGTCAAGGGGCGAACTGGGGAACAGGCTAAGCAGCGGGCTTCCAAGCGCGTCTCGCAAATACATCAACGATAGGGCGGGGGACTGGGGACTAGGGCGAACCCGTTTCGACTGCTGAGACTTTCTAGACTTTGCTGAACCGGTAAATAGCCACTCTGCACAGTGCCTGTGCTTTTTGTGTATGCAGTGTGGAAATAAAGGGGTTTTAAGGCCACATTTGCGAACTGGACAGGAGGAAGGAGAAATGGAGTTTCCATTGGTTTCGGTGAGTCGCGCATTTGGTCTCCGTCTCTGGTAATGCCAGTGGTGTGGGGATCTCCGTGCAGCTCAGGAAAACAGGGCGTCGGAGGATGGTGGTAATGATAGGATCATCATGGCAAACGGAACTGGTACTCTTATGTTGAAATGCGTTGTGGTTGGAGACGGTGCTGTGGGCAAAACGTGTCTGTTGATGAGCTATGCCAACGACGCCTTTCCAGAGGAGTATGTGCCCACTGTGTTTGACCATTATGCAGTGAGTGTCAATGTTGGCGGAAAGCAGTACTTATTGGGACTGTATGACACAGCTGGTCAGGAGGACTATGACCGCTTGAGGCCTTTGTCGTACCCCATGACCGATGTCTTCCTCATCTGCTTTTCTGTGGTCAACCCGGCTAGTTTCCAGAATGTGAGGGAGGAGTGGGTCACCGAGCTGCAGGAGTATGCCCCAAGTGTCCCCTACCTCCTCATAGGCACTCAGattgACCTGCGTGATGACCCCAAGACCATTGCCAAACTGAATGACATGAAGGAAAAACCCATCACCACAGAGCAGGGCCAGAAGCTAGCCAAGGAGATTGGTGCGTGTGTCTACGTGGAATGCTCGGCTCTCACCCAGAAAGGACTGAAAACTGTGTTTGATGAGGCCATTATCGCTATCCTGAACCCCAAGAGGAAAAAGGGAGTCTTGAAGAGAAGACTGGGGCCACGCTATATCAACTGCTGCCTCATCACGTGAGAGATGCAAACATCCAAAAACACCTGGGTCGTATTTATTAGGGCATGCaatggaaaatgttttaaaacatgtgaaaacggaaaacaaaaacaagcatttcttattggacaagatcAGGAAGCCCCACCCTGTTTCAggctgttttcttccatttggtgcctaatgaatacaaaCCAGAACGAATGACAGAGACCGCGGAGAGGACataaaaggggggagagaggctgAAGGACCGACATGGACAAGGACCCTATTTTTAGTTTGGGGCTCTTGAGCGGTTTTGTCTCTCCTGCTGTTGACCAATGGAGTTAGGGGGCAGCTTTATTACCAAAGGAGCACAATACCCAAGTCAACAACGCCCTTCAGTAAGACTTTATTTGCCTTTATAAGTACTTTTAAAAAACACGCTGTAAGCTGTCAGAAAACCCATAGGTATCACGTGCCCATTTAACTCCTAATATGACATGTATTTTTAATAATATTTGCTGTAGCAATTAACGAATGGGTTGATTGCATTTATTGAAGGCGCTTTCCATCAAGCCTCCAAGCGCTTTACATTGTGTGTTTGAGTAACTCACCTCAGCCACAACCAATGAAATGCTTTGTTTAAAAGAACAGGCTATTCCCCTCAACTATGGGGAGTTGTCTTTTTTTTCTACTAATCCCACATTTTATAACATTATCTGCTCTTCTTGCTCAGTTTGCGGTGCTTGCAGTATTATTACTAAACTTGGACTTGAATTAATCAGTAACCCAATGGTGGCCAAATAATTGAATGCACACAGCTGCGTGGGATACAGACTCTTTGGGGAGAGAAGCACACAACATGAAGCACACTCCACATACCTATCCTTGTCCAATAAAGCACAGTTAAAAGTTGACCCACAAACCCCTACCATTAGCATTATCGTGCTGACCTGAACATAGTGTGTTAATGGCTGCAGAACCAGTCCATCCCAATTCAGCTCAGTTCGgcttggctcagtagtgtgaaaagggcaCCCCTCAATTCTGTCATTGAAGCACAGAACATACCATGGTTACAACATCCACCCCCAAAGGCCAAGGAGGTGCATGTATGAGCACAATAAGCCTGCTCCAACCATATTCCAACCCCAGCCATATTCCAACCCCCTCTTCAGACACATATGCCTTCCCCAGCCAGAAGATatctcttctttttttttgcatttttctATCCATTGGGAAGGTGCTTGCCGACTGCCTGATCTTAGTGTTTTTAAGGCCAAAGTTGGActtgttaatttttttttattttttaaagcttTAATGTATATGGTGCtcctctctttctcgttctctgtCCCAGCCTGCTGTGCTGTGTAGTGTTTTCCCTAGAAGAGCGGAGTGGATTATTGAGTGTTGACATTCTCTATTTACCAGGAAGTTGTGGCACATGCTGCTACTGAGGTAAACTGAATGGATCTATAGCGGTGCAGAAACAAGTGCAGCTTCTGGTTAACCCTTTTCTCTACTCAATAAATGTGTTTTACTATCTAAAACCTTTCTTTGGGGTCTTCTTTGAGGATGTGTTACAGGACATTATGATGTTTGGTTATGTATAGATGTTGTTTTTATAAGTACAGTATTGGGCACACTTGATTTGGATCCGTTGCTAGCTAGGCCGTGGTGACCTCGTACAGGAAGGAGTGTCTTCGAAGTGTGTCACACGTGATTCCTCCCGAAACCCAGAACAACAAAGACCATGATTCACACAATGTAATC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07194 RHOQ, TC10; Ras homolog gene family, member Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79236 lncRNA upstream 29299 64987228 ~ 64991904 (+) True G71654
TU79234 lncRNA upstream 35914 64943334 ~ 64985289 (+) True G71653
TU79372 lncRNA upstream 88723 64905999 ~ 64932480 (+) True G71779
TU79030 lncRNA upstream 560834 64460165 ~ 64460369 (+) True G71472
TU79026 lncRNA upstream 562293 64458532 ~ 64458910 (+) True G71468
TU79450 lncRNA downstream 26774 65068384 ~ 65115001 (+) True LOC110527013
TU79529 lncRNA downstream 153208 65194818 ~ 65256475 (+) True G71935
TU79540 lncRNA downstream 188554 65230164 ~ 65231403 (+) True G71945
TU79592 lncRNA downstream 285983 65327593 ~ 65328512 (+) True G71997
TU79642 lncRNA downstream 364820 65406430 ~ 65444673 (+) True G72047
XM_036982824.1 mRNA upstream 4518 64993070 ~ 65016685 (+) True LOC110532561
XM_021608165.2 mRNA upstream 36899 64972394 ~ 64984304 (+) True LOC110526991
XM_021608144.2 mRNA upstream 75039 64809255 ~ 64946164 (+) False LOC110526969
XM_021608095.2 mRNA upstream 237466 64774135 ~ 64783737 (+) True LOC110526912
XM_021608102.2 mRNA upstream 238001 64773915 ~ 64783202 (+) False LOC110526912
XM_021608186.2 mRNA downstream 26478 65068088 ~ 65120931 (+) False LOC110527013
XM_021608196.2 mRNA downstream 120048 65161658 ~ 65167877 (+) True prop1
XM_021608214.2 mRNA downstream 131679 65173289 ~ 65214535 (+) False LOC110527046
XM_036982860.1 mRNA downstream 131679 65173289 ~ 65214535 (+) False LOC110527046
XM_021608217.2 mRNA downstream 131679 65173289 ~ 65215364 (+) False LOC110527046
TU79281 other upstream 119579 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 1745907 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 3287815 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 3705951 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 5079139 59941486 ~ 59942064 (+) True G66188
TU80728 other downstream 874125 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 874125 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 1246069 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 1378885 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 1714597 66756207 ~ 66758984 (+) True G74067

Expression Profile