RNA id: TCONS_00026325


Basic Information

Item Value
RNA id TCONS_00026325
length 1689
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_013312
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15287065 ~ 15329471 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCATACTCACTGTTGTTGTGTGCAGAAGGACTGACAGTGTTTCTAAGTGGACGGCAAAAGCATCATTCAGAGATGAGTTTGAGTGATATTCTGTCAGAGATCGACGGTGGAGATGACAAGAAGGTTGAAAAACTTTTGCTGAAGTATAACACTGAGAACAGTCGCACGTTTGCCTTCGACCTCGAGGAGGAGGGTGCACGAATTAAATTATGTCAGGGTCTTCTTACAGTCCTCCGTCGGTCAGATCTTCCACTTTGCCAAAGCACCTGCCTGGAGACCCTGCGCATCTTGTCCAGAGACAAGCATGTGCTTGGACCCGTAGCCACCAAAGAAGGAATGCTTACTTTAGCAGGACTTGCCCGGATCTGTGTGGCGGGCCATGAAGGCGAGCCATTAGAGGAGGCGCAGTCAGCAGAAGAGGAGAGGGTTGTGGTGGAGGCCCTTAAGTGCCTGTGCAACGTAGTGTTCAATAGCGTGCCGGCACAGCAGATGGGAGGTGACTTGCAGTTAGCGGAAGGCCTATGCCCCCGCTTGCATTTGGTCAGCGCGTCACATCATGAAGTGGGCTTATTTTCCCTCCGGCTGCTGTTTTTGCTTTCGGCTCTGCGGACGGATGTGCGCTCCACGCTTCAGAAGGAGGCAGGCGCGGTGAAACTACTCACTAATGTGTTGGAACGCACTCTTGATGTGCGTTGGGTTGGGCCATATGAGGCTGCACCTCCTGATCCAGAAGCTCCACCCATTCCACCAGAAAACAACGAGCTTACCATGGAAGCCCTCAAAGCCCTGTTCAACCTCACCATGTCTGATTCCTGTGATAAGGACAGTCTCCACAAACTTCGGCTGATTGCAGGCATCATGAGACACCTCCtaatgctgaaaacacacactgaAGAAAAAACTGAGGAGACTCACAGAtaggtacaacatcaatctgaagtcatgttgacatcctgcaCCTGCTGGGAAACatcatgaatttaaaatatttcttcaATAACGACAACAACTTAAACCAACCTTTAAAGAAGTGCCCATGATTATGAGAAGATCTGCTTTTGGGAAATCTTCAGCATGTTGGAAGTATTTTTCCGGCAGATCTTCTCCAAAGAACACAACATTAGGTTTGACGGCCCCAGCGCAGAATGTGCAGATGGGAACACTCCCGTTCATTATAGCTTGCTGAGAGAAAAACACAAAAGCAGTTTATGTGTAGTGCGTAGAATGGTGCAAACTCAATACCATCTATTTTAGCTCTATTTACCTTGGCTTCCTCTGCAGGATAAGGAGTATAGCAGAGGTGACAGGCAGCGGTGGCAAAACTCCCATGAGCCTCCACAAGTTTGTCATCAGGGATACCGCAAACTACAGACAGGGTTAAAGAGAGAGTTCACACAAATACTATTGACtaatgaataaaacacagcaaatCAGTAAAGACGTTTAAGGTTAGACATTCCAGGCAAAAatgttgagattttttttttactttttccttaaatgctttttCAGTCTAATGGAaggaataaataataacaataaataaatagctaaattttATTGTGATTATGCCATATTTGAGGGCAAAGGtgccccctggtggttcggcagacgaataaacaggaaaatatttaaataggaTAACAGCCGCACGGAATAGTAAAATCACGGGAGAATGCCaggttt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0070285 pigment cell development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0001965 G-protein alpha-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6435 Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Acts upstream of or within pigment cell development. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RIC8B (RIC8 guanine nucleotide exchange factor B).

Ensembl:

ensembl_id ENSDART00000191903

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027276 lncRNA downstream 95253 15188017 ~ 15191812 (-) True XLOC_013310
TCONS_00027275 lncRNA downstream 521182 14763903 ~ 14765883 (-) True XLOC_013300
TCONS_00026294 lncRNA downstream 1999414 13281654 ~ 13287651 (-) True XLOC_013291
TCONS_00027274 lncRNA downstream 2172747 13077843 ~ 13114318 (-) True XLOC_013288
TCONS_00027273 lncRNA downstream 2423542 12862604 ~ 12863523 (-) True XLOC_013284
TCONS_00026330 lncRNA upstream 38046 15367500 ~ 15370455 (-) True XLOC_013313
TCONS_00027277 lncRNA upstream 241457 15570911 ~ 15592525 (-) False XLOC_013318
TCONS_00026344 lncRNA upstream 564290 15893744 ~ 15899848 (-) True XLOC_013322
TCONS_00027278 lncRNA upstream 609807 15939261 ~ 15970557 (-) False XLOC_013323
TCONS_00027279 lncRNA upstream 632586 15962040 ~ 15970573 (-) True XLOC_013323
TCONS_00026324 mRNA downstream 17793 15259388 ~ 15269272 (-) True XLOC_013311
TCONS_00026323 mRNA downstream 131103 15147931 ~ 15155962 (-) True XLOC_013309
TCONS_00026321 mRNA downstream 182207 14956165 ~ 15104858 (-) True XLOC_013307
TCONS_00026320 mRNA downstream 185872 14956165 ~ 15101193 (-) False XLOC_013307
TCONS_00026318 mRNA downstream 345225 14928040 ~ 14941840 (-) False XLOC_013306
TCONS_00026329 mRNA upstream 4663 15334117 ~ 15373620 (-) False XLOC_013313
TCONS_00026331 mRNA upstream 52575 15382029 ~ 15420168 (-) True XLOC_013314
TCONS_00026332 mRNA upstream 129864 15459318 ~ 15467446 (-) True XLOC_013315
TCONS_00026333 mRNA upstream 139561 15469015 ~ 15551456 (-) False XLOC_013316
TCONS_00026334 mRNA upstream 140403 15469857 ~ 15551360 (-) False XLOC_013316
TCONS_00026322 other downstream 250796 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026312 other downstream 415929 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026302 other downstream 949607 14336627 ~ 14337458 (-) True XLOC_013296
TCONS_00026298 other downstream 1742698 13544250 ~ 13544367 (-) True XLOC_013294
TCONS_00026297 other downstream 1808843 13477102 ~ 13478222 (-) True XLOC_013293
TCONS_00026338 other upstream 249048 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other upstream 258633 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026341 other upstream 546208 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026386 other upstream 2082416 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026401 other upstream 3239787 18569241 ~ 18569322 (-) True XLOC_013355