RNA id: TU25302


Basic Information

Item Value
RNA id TU25302
length 255
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G21783
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22630149 ~ 22630403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcacagagttacacatggaataaacaaacatgcagtcaataatgcAATAGAAAAAgtccatatacagtgtgtgcaaattaggtaagataagggaggtaaaggcaataaataggccatagtggcgaaataattacaatatagcaagtaaacactggagtaatagatgtgcagaagatgagtgtgcaagtagagatactgggatgcaaaggagcaaaataaataaataaataaaagtttggggatgaggtagttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25301 lncRNA upstream 138 22629719 ~ 22630011 (+) True G21782
TU25292 lncRNA upstream 6671 22622169 ~ 22623478 (+) True LOC110513869
TU25264 lncRNA upstream 44229 22583659 ~ 22585920 (+) True G21745
TU25267 lncRNA upstream 53061 22576811 ~ 22577088 (+) True G21748
TU25263 lncRNA upstream 53986 22575566 ~ 22576163 (+) True G21744
TU25304 lncRNA downstream 2735 22633138 ~ 22633346 (+) True G21785
TU25727 lncRNA downstream 82056 22712459 ~ 22712740 (+) True G22180
TU25981 lncRNA downstream 285901 22916304 ~ 22917005 (+) True G22400
TU26308 lncRNA downstream 512862 23143265 ~ 23147531 (+) True G22711
TU26388 lncRNA downstream 569049 23199452 ~ 23199686 (+) True G22790
XR_002472098.2 mRNA upstream 6707 22620666 ~ 22623442 (+) False LOC110513869
XR_005041338.1 mRNA upstream 6707 22620666 ~ 22623442 (+) False LOC110513869
XR_005041342.1 mRNA upstream 6707 22620666 ~ 22623442 (+) False LOC110513869
XM_021590144.2 mRNA upstream 194999 22432310 ~ 22435150 (+) False zgc:110339
XM_036971711.1 mRNA downstream 83271 22713674 ~ 22869379 (+) False LOC110510174
XM_036971767.1 mRNA downstream 83271 22713674 ~ 22869379 (+) False LOC110510174
XM_036971828.1 mRNA downstream 83271 22713674 ~ 22869379 (+) False LOC110510174
XM_036971864.1 mRNA downstream 83271 22713674 ~ 22869379 (+) False LOC110510174
XM_036971865.1 mRNA downstream 83271 22713674 ~ 22869379 (+) False LOC110510174
TU24207 other upstream 1061961 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 2320251 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 2353254 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 2387274 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 2714317 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 907993 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 944189 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1242618 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1242618 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 1874252 24504655 ~ 24506116 (+) True ccl4

Expression Profile