RNA id: XR_002472098.2


Basic Information

Item Value
RNA id XR_002472098.2
length 1402
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110513869
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22620666 ~ 22623478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaagccaggcctaattgcccgacttcactaatgctcttgtagctgaatggaagcaagtccccacagcaatgtgatgttcgacgagcaggtgtccacatacttttgtcatgTATTGTACATGTATTAGGATCACTGATGTGAAGATCTGTATTGTGGTATATTTAAATCAATGAACAGTTAAAGAATAGAGATGAGCACAATCTAAGGATTACCATACTACCAAGATACTCTCATCAAAGATAATTATTTGAGAATGACTGCCTGGTGGCACATGTTATATGATTCAGAAGCTGACATGTTGTGTTTGTCCCTAAATATTAAGCAAATAAGCCTGAAATGAAAGTCACTGGGAAAGAATGGGTACTGGTCAACCTAAATGTCTCTGGATACTACAGGGTTAGAGCTATGATGAAGCCAACTGGGAAAGTCTCATCAACGTACTGAGCACCATTCCTCAGTTATCAATGGAGCTCAATTGGTGGATGATCCTTTTAACCTTGCAAGGTACAACCAAGTGAATGCCATTAGGATGGCCTGTAGCACTGGAATGACGGAGTGTCAGAATCTGACTAATGGCTGACCCTGTCAACAATCCgtacctggACTACACCCTGGATGCAACCAACATCTGCAAGCAGGATGCCACCTCTACCATTTTTTACATTGCAAGCAATGTTGTTGGCCAGTCTCTGGCCTGGGACTTTATGAGAGACAGATGGGGTTACATCTTAACTCAGTACGGAGGTggttctttctccttctccatctccaaTCTCATCGATGGTGTGACCAAGAGGTTTTCAACTGAATTTGAGTTCTAACAGATGGTATTACAGATTAGGGGATTTGTCAGCACATATTGCTCAACATGTTTGTATTGGGGTACGATGTGGACCCTAAATGTAGAGTTTTCTATATTGCACAATATAAGTTAATGTTTCTCTTCGCTGTCACAGCTCATGCAGTTACAGGCAGACAACTGAGGTTGGCTTCGACTCGGGTATCTTTGCAATTTCACAGGCCATTGAGCGGACAACAGCTAACATCAAATGGGTGGCAGAGAACAAGAACTGTGCAGGCATGGCTTAAAGCAGAGACTGATGCACCATAATGGTCACATGGAGAAACAAACACCTGTCCATTTATTTATTATCTAAGACCAATCCTAAAGCCATGtttcttgttgtttttttgtctctCTAACAGTCAATGACACTTTTTATTCTAAAGTTATCCTGCCCCTTAATCAGAAATACTATGTCGGCCTATACTTCTATTTTTTGGGGAAATAACGTTGTATGAATTAAAACATAATTTTTCTATCAAAGACTAACTTTCTAAAATGCTGCATTGCTATTAAACACTGGTTTATGATTGTGGATTGTGGAAATAATGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25264 lncRNA upstream 34746 22583659 ~ 22585920 (+) True G21745
TU25267 lncRNA upstream 43578 22576811 ~ 22577088 (+) True G21748
TU25263 lncRNA upstream 44503 22575566 ~ 22576163 (+) True G21744
TU25170 lncRNA upstream 133188 22477215 ~ 22487478 (+) True G21656
TU25164 lncRNA upstream 146382 22473944 ~ 22474284 (+) True G21650
TU25301 lncRNA downstream 6277 22629719 ~ 22630011 (+) True G21782
TU25302 lncRNA downstream 6707 22630149 ~ 22630403 (+) True G21783
TU25304 lncRNA downstream 9696 22633138 ~ 22633346 (+) True G21785
TU25727 lncRNA downstream 89017 22712459 ~ 22712740 (+) True G22180
TU25981 lncRNA downstream 292862 22916304 ~ 22917005 (+) True G22400
XM_021590144.2 mRNA upstream 185516 22432310 ~ 22435150 (+) False zgc:110339
XM_021590070.2 mRNA upstream 185516 22432318 ~ 22435150 (+) True zgc:110339
XM_036970373.1 mRNA upstream 198384 22281089 ~ 22422282 (+) True LOC110532091
XM_021589846.2 mRNA upstream 394562 22212332 ~ 22226104 (+) True LOC110508905
XM_021589385.2 mRNA upstream 512809 22024629 ~ 22107857 (+) False LOC110508655
XM_036971711.1 mRNA downstream 90232 22713674 ~ 22869379 (+) False LOC110510174
XM_036971767.1 mRNA downstream 90232 22713674 ~ 22869379 (+) False LOC110510174
XM_036971828.1 mRNA downstream 90232 22713674 ~ 22869379 (+) False LOC110510174
XM_036971864.1 mRNA downstream 90232 22713674 ~ 22869379 (+) False LOC110510174
XM_036971865.1 mRNA downstream 90232 22713674 ~ 22869379 (+) False LOC110510174
TU24207 other upstream 1052478 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 2310768 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 2343771 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 2377791 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 2704834 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 914954 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 951150 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1249579 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1249579 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 1881213 24504655 ~ 24506116 (+) True ccl4

Expression Profile