RNA id: XM_021590070.2


Basic Information

Item Value
RNA id XM_021590070.2
length 1762
RNA type mRNA
GC content 0.41
exon number 6
gene id zgc:110339
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22432310 ~ 22435150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGACTAGTAGTAAATAAGGAGAATGGAGCGGAAACAGTTCAGACACGAAATCAAGCGTATTGATCCGCATTGGTCCATTCCAGTTGCTATGAAATTTAAACCACGCCTTCAGATTGTATCGCTACAAAAATGATGGCTGGACACTGAGACCGATCATACTTCTTCATTAAACAAAGTTAACAGACATCTACTAACTATGACTCTAAAATTCACAAAATGTCAATCTGTACTAATCACTGGAGCGAGCAGAGGCCTCGGTCTACAAATGGTGAAAGACCTGGCAAGAAGCACCGAGAGACCCAAAACAATAATAGCGACTGTTCGCAATCCAGCCGCAGCACAGGATCTTCAAAATATTGCCAAGTCCTGCAAAGGTGTTTATATTGTACAGCTTGATGTTGTCAGCCAGTCAAGTATAGACTCAGCATTGCAAGCGGTGTCATCTATACTTGGAAGTGATGGGCTGAATTGCCTCATAAACAACGCAGCCATCAATCTATCCACTGATCTGAAGACAGTGACACCTGACGCCATGATGAAGACTTTTGAGAGTAATACTGTTGCCCCTCTTTTTGTCACCAAGGCATTTCTGCCATTGCTACAGGCAGCTGCTGCACGGGGCACTGGAATGGGGATCCATAGAGCAGCTGTGATTAACATCTCTTCCATACTCGGCTCCATTAAGGTCAACTGGGGAGCCGGAGCAGCCTTCAAAAGCTATGCCTACAGAACCTCAAAGGCTGCCTTGAACATGATGACAAGGTGTCTGGCCACTGACCTGGAATCTGAAGGGATTCTGTGCATGGCTCTTCACCCTGGCTGGGTGCGCACTGACATGGGTGGCCCACATGCGGATTTGAGTGCGGAGGAGAGCATATCATCTTTGCTGTCTGTTATCACTGATCTGACAGAAAATAATCATGGGGGATTCTTGGACTACTCTGGAAACAAGCTACAATGGTGAAGCTCAACTTGGAAACAGTAACTTGTGGAATGGGTTATGTGCAGTTTTTCTGCTGGTGCTGCCAACAGTTCACTGGGACAAAACACAGCAGAGATCACAGAATAGAACAAACAACTGCAACATCATGCTATTATGTTGCTCAGCAATCTCTGACTCCTTTGTATCTAGTTGGTGTGAGAGAGAACTTGGAGATTTGACATTTTAAATTGGAGACTTTGTTTCATCTGAGTGGTTTGGGTTGTTGTTACACTTTCTAAAGGTAATCTCACTGTTTGAATACaaactatatactgtataatacatataTAGGAATAACAATGTTTTGCCATTCAAAAGTTTTATTCAGTCCATTTCTTTCAAATTATAATAAGAACGTGATTAATCTGTTTAGTATATTGTTGTTATGATGACACCAGTATAATGGGAAATGTACAGATACTGTTGTTTGTAGGCAGGTAAGGCGTAGAGAAGAGATCAGTTGAACTAGGGCTGATCCATCTCTtctgatgtgagagaggaaggcATGGTATCCAGAGCTCCGATTTCTGTAAGGTAGATGACGAAACATTTGAGTGAGCACAGTTAGATGGTTATAACTGATTAGGACTATGCTAGTATTTGTTGTGTTCCAAATGTTGTAGCAACATATAGCCAGGAATCTTGACTAGAAATGTAAtctgtaaatacatttgaaatacaAATATAACTAGACCATatgaaaaacatgattatttTACTATTTTTGGAACATGTCAAAACGCCTGATTtttattcattaaaaaaataacaatcatGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25137 lncRNA upstream 32174 22399670 ~ 22400144 (+) True G21625
TU25131 lncRNA upstream 37047 22392636 ~ 22395271 (+) True G21620
TU25130 lncRNA upstream 39739 22391849 ~ 22392579 (+) True G21619
TU25129 lncRNA upstream 40700 22391401 ~ 22391618 (+) True G21618
TU25124 lncRNA upstream 50167 22381838 ~ 22382151 (+) True G21614
TU25167 lncRNA downstream 32620 22467770 ~ 22468675 (+) True G21653
TU25164 lncRNA downstream 38794 22473944 ~ 22474284 (+) True G21650
TU25170 lncRNA downstream 42065 22477215 ~ 22487478 (+) True G21656
TU25263 lncRNA downstream 140416 22575566 ~ 22576163 (+) True G21744
TU25267 lncRNA downstream 141661 22576811 ~ 22577088 (+) True G21748
XM_036970373.1 mRNA upstream 10036 22281089 ~ 22422282 (+) True LOC110532091
XM_021589846.2 mRNA upstream 206214 22212332 ~ 22226104 (+) True LOC110508905
XM_021589385.2 mRNA upstream 324461 22024629 ~ 22107857 (+) False LOC110508655
XM_036970165.1 mRNA upstream 324461 22024646 ~ 22107857 (+) True LOC110508655
XR_005041163.1 mRNA upstream 605189 21819189 ~ 21827129 (+) True LOC118946025
XR_002472098.2 mRNA downstream 185516 22620666 ~ 22623442 (+) False LOC110513869
XR_005041338.1 mRNA downstream 185516 22620666 ~ 22623442 (+) False LOC110513869
XR_005041342.1 mRNA downstream 185516 22620666 ~ 22623442 (+) False LOC110513869
XM_036971711.1 mRNA downstream 278524 22713674 ~ 22869379 (+) False LOC110510174
XM_036971767.1 mRNA downstream 278524 22713674 ~ 22869379 (+) False LOC110510174
TU24207 other upstream 864130 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 2122420 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 2155423 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 2189443 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 2516486 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1103246 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1139442 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1437871 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1437871 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2069505 24504655 ~ 24506116 (+) True ccl4

Expression Profile