LOC110508655 (LOC100380741)


Basic Information

Item Value
gene id LOC110508655
gene name LOC100380741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22024629 ~ 22107857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589385.2
TCCTTCCCACCTTGAAAGCGGGTACCCTCGCTCTCGTGCATACTGCTGAACAGAGCGTCTCGGGGACTGGTAAAACTTGTTTTGTTACAACCTCTAGACTATTGCCTACCCACTTGTGTTACCGACGGACCGATGCCTGTGTAACAGACCTTTAACGGAGTTTGTACTGAATGGAATAATATCTCTGGCGTCCAAGTTCTGAATCTGATGCGGTTTTCACAAGTGTGGGATTTGTAACACTGCGCTGGTGTGACATCGTTCGCATGTAAACCGATTGAGCAGGATTGACTCTTGGAAGTGGTCAAAAAATGGactactgttaatttttattcaCAATGGGATTAAAACTATTTATTTTCCTCGGTTTATTCTGCGTCACCTCAGTTTTAGGTTTCGGGGTTGATCCTGCTCTATGCATCAATGTTTTCGATGAATTGACGCTTGGAGAGGGTTTTGATGGAGTTACTCAAGTCCAGGGCTTCCACAGCGAGTCTCGGGCGTTCCACTTTCAAGGTTCGTCCAGGGAGGTGAAGGCTCCTGAGGATGTGTCTGAGCGGATGCTCCAGAAGCTGAGGGGCCGGAGGGAGTTCACCGTTGTGGTCACCCTGAAACAGGAGCACTTCAACTCTGGGGTCATCCTATCCATCCACCATTCTGAACAGAGGTTCCTGGAGTTGGAGAGCAGTGGGCAGCGCAATGAGGTGCGTCTCCACTACCGCACCAAGGGTCAGAAGGCCCACACCGAGGTGTTTCCCTACAGCCTGGCAGACGGACAGTGGCACAAGGTTTCTGTGGCTGTCAGTGCCTCCCACATCATACTGCACGTTGACTGCAACAGgaTCTATGAGAGGGTGGTAGAGATCCCATTCATGGACATCCCTGAGGACACAACCTTCTGGTTAGGGCAGCGGAGCAGCGCCCATGGCTTTTTTAAGGGTGTAATGCAGGACGTTCAGATATTAGTCATGCCTCAGGGATTCATCTCCCAGTGCCCAGATCTCAACCGGACTTGCCCAACCTGCAATGACTTCCACGGACTGGTGCAGAAGATCATGGAACTGCAGGATATCTTAGCCAAAACATCCAGCAAGCTGTCCAGAGCAGAGGAGATGATGAATAGTCTGGATGGATGCTACTGTGAGAGGACCTGCAGCGTCAAGGGGGTCGTCTACAGAGAGGACGAATCATTGACAGATGGCTGCAGGAACTGCACATGCACGAACGGCACGGTGCAGTGTGAGACTATCTCCTGCCCTCCCCCTCAGTGCCCAGCGGACACCACGCCTGCCTACGTGAAGGGTGCCTGCTGCATGGAGTGCCAACCTGTATGCCATTTCGGAGAAGAAGAGTTGGTGGAGGGAGATCAGAAAGCGGTGCATTATAACTCTGGCAGATGCCAGCTGTCTGAGTGCAGGGAGAGGACCATGCATCGGGTCGTCATGACTAGCCCCTGTCCTGAACTTAACTGTCCAGAGTCCGAGCAGGTCACCCTCACCAACAGGTGCTGCAAAGTCTGCAGAGGTCACGACTTCTGTGCGGAGGGTCACGGCTGTGTGGAGCACTCTGACTGTATCAACCTGGAGGCTGGGGCCTGCTGCAGCTGCAAGGACGGCTTCCGCCCTCTCCGAGATGACAACGCATACTGTGAAGATATCGATGAGTGTGCAGAGGGGAAACACTACTGCAGGGAGAACACCATGTGTGTCAACACCCCCGGCTCCTTCATGTGTGTCTGCCACACGGGTTACATCAGGATCGATGACTACTGCTGCACAGAGCATGATGAGTGTGTGAGCGGACTGCACAGCTGCGCCCAGAATGCCCTCTGTTTCAATACGGTGGGGGGACACAGCTGCTCTTGTAAGCCGGGATACACTGGCAACGGTACCATCTGCAAAGCGATGTGTGATGGCCTGTGCCAGAATGGAGGAACCTGCATCTCCCCTAATAACTGCATCTGCCAGCTAGGCTTCACAGGGAAGAGGTGTGAGACAGACATCGATGAGTGTTTTCATGGTTTCGTGGAGTGTGATGACAAAGCCATCTGTGTCAACTTGCCCGGGTGGTACCACTGCGAGTGTCTGGATGGCTACCACGACAACGGCTTGTTCTCTACTAATGGGGAGTCGTGCATAGATATCAATGAATGCAAGACGGGGAGGAACACCTGTGCCAATGACACGGTGTGCTTCAACTTAGAGGGGGGCTATGACTGCAGGTGCCCCCACGGGAGGAACTGCACCGGAGACTGTATtcatgacaacaaagtcaaacaCAATGGACAGATCTGGGTGCTGGACAATGATAGGTGCTCAGTCTGCTCTTGTCAGACTGGCCGGGTGATGTGCAGGAGgatggtgtgtgactgtgagaaCCCGACAGCTGATCTGTTCTGCTGTCCAGAGTGTGACCCTCGCCTCAGCAGCCAGTGTCTGCACCAGAACGGCCTGCTGACCTACGGCAGTGGAGACACCTGGGTGGAGAACTGCCAGCAGTGCCAGTGTCTGCAGGGACAGGTGGACTGCTGGCCCCTGTTGTGCCCCCATGTGGACTGTGAATTCACGGTGGTGCCCGAGGGCGAATGCTGTGCCCGCTGCGTCACTGATCCCTGCCAGGCCGACACCATACGCAACAACATCACCAAGACGTGCATGGACGAGCACGGCATCCAGCGCTTCAGCGGGTCCTCATGGGTCAAACACAGCACCGAGTGCACCCTCTGCCAGTGCAAGaaTGGACATATCTGTTGCTCAGTGGACCCCATGTGCCTTTAGTTCCTGAAGCTCTGAAGGCACCTCCCTGTACAGTGTTATCCATGTAAAAACAACCAGCGTTTTCCACCCTCCAGCCCAACTTCTTTATACCAAATACAAAACATGTATCATAGAACACAGATGGACTACAGTACCCACAAGCCCCCTCTGTGTTCAGCCTCACCAATCAGGGTGACCTGTGTGCATTGAGGAACACCCCCAAATCATCTGCAACACGACGCTGTAAAATACTATTATACTGGCATGAATGTGCTCGATGTAGAAACATTTTgctcatttatagactcttttaATGTCAATGATGTCCTAGATAGTGGTTGTTTTAGTGTAAGTTTCATTTGCTACACTATTAAAGTTGTCGATATTTTGTGGTCCTCTAGCATTATTTTCTATTCATCTTTTACATTTATTTCCAGGCTTGTTAATGTGTAATGGTGAATAAAGTATTTCAATTTACATGAA
>XM_036970165.1
GCGGGTACCCTCGCTCTCGTGCATACTGCTGAACAGAGCGTCTCGGGGACTGGTAAAACTTGTTTTGTTACAACCTCTAGACTATTGCCTACCCACTTGTGTTACCGACGGACCGATGCCTGTGTAACAGACCTTTAACGGAGTTTGTACTGAATGGAATAATATCTCTGGCGTCCAAGTTCTGAATCTGATGCGGTTTTCACAAGTGTGGGATTTGTAACACTGCGCTGGTGTGACATCGTTCGCATGTAAACCGATTGAGCAGGATTGACTCTTGGAAGTGGTCAAAAAATGGactactgttaatttttattcaCAATGGGATTAAAACTATTTATTTTCCTCGGTTTATTCTGCGTCACCTCAGTTTTAGGTTTCGGGGTTGATCCTGCTCTATGCATCAATGTTTTCGATGAATTGACGCTTGGAGAGGGTTTTGATGGAGTTACTCAAGTCCAGGGCTTCCACAGCGAGTCTCGGGCGTTCCACTTTCAAGGTTCGTCCAGGGAGGTGAAGGCTCCTGAGGATGTGTCTGAGCGGATGCTCCAGAAGCTGAGGGGCCGGAGGGAGTTCACCGTTGTGGTCACCCTGAAACAGGAGCACTTCAACTCTGGGGTCATCCTATCCATCCACCATTCTGAACAGAGGTTCCTGGAGTTGGAGAGCAGTGGGCAGCGCAATGAGGTGCGTCTCCACTACCGCACCAAGGGTCAGAAGGCCCACACCGAGGTGTTTCCCTACAGCCTGGCAGACGGACAGTGGCACAAGGTTTCTGTGGCTGTCAGTGCCTCCCACATCATACTGCACGTTGACTGCAACAGgaTCTATGAGAGGGTGGTAGAGATCCCATTCATGGACATCCCTGAGGACACAACCTTCTGGTTAGGGCAGCGGAGCAGCGCCCATGGCTTTTTTAAGGGTGTAATGCAGGACGTTCAGATATTAGTCATGCCTCAGGGATTCATCTCCCAGTGCCCAGATCTCAACCGGACTTGCCCAACCTGCAATGACTTCCACGGACTGGTGCAGAAGATCATGGAACTGCAGGATATCTTAGCCAAAACATCCAGCAAGAACGGCACGGTGCAGTGTGAGACTATCTCCTGCCCTCCCCCTCAGTGCCCAGCGGACACCACGCCTGCCTACGTGAAGGGTGCCTGCTGCATGGAGTGCCAACCTGTATGCCATTTCGGAGAAGAAGAGTTGGTGGAGGGAGATCAGAAAGCGGTGCATTATAACTCTGGCAGATGCCAGCTGTCTGAGTGCAGGGAGAGGACCATGCATCGGGTCGTCATGACTAGCCCCTGTCCTGAACTTAACTGTCCAGAGTCCGAGCAGGTCACCCTCACCAACAGGTGCTGCAAAGTCTGCAGAGGTCACGACTTCTGTGCGGAGGGTCACGGCTGTGTGGAGCACTCTGACTGTATCAACCTGGAGGCTGGGGCCTGCTGCAGCTGCAAGGACGGCTTCCGCCCTCTCCGAGATGACAACGCATACTGTGAAGATATCGATGAGTGTGCAGAGGGGAAACACTACTGCAGGGAGAACACCATGTGTGTCAACACCCCCGGCTCCTTCATGTGTGTCTGCCACACGGGTTACATCAGGATCGATGACTACTGCTGCACAGAGCATGATGAGTGTGTGAGCGGACTGCACAGCTGCGCCCAGAATGCCCTCTGTTTCAATACGGTGGGGGGACACAGCTGCTCTTGTAAGCCGGGATACACTGGCAACGGTACCATCTGCAAAGCGATGTGTGATGGCCTGTGCCAGAATGGAGGAACCTGCATCTCCCCTAATAACTGCATCTGCCAGCTAGGCTTCACAGGGAAGAGGTGTGAGACAGACATCGATGAGTGTTTTCATGGTTTCGTGGAGTGTGATGACAAAGCCATCTGTGTCAACTTGCCCGGGTGGTACCACTGCGAGTGTCTGGATGGCTACCACGACAACGGCTTGTTCTCTACTAATGGGGAGTCGTGCATAGATATCAATGAATGCAAGACGGGGAGGAACACCTGTGCCAATGACACGGTGTGCTTCAACTTAGAGGGGGGCTATGACTGCAGGTGCCCCCACGGGAGGAACTGCACCGGAGACTGTATtcatgacaacaaagtcaaacaCAATGGACAGATCTGGGTGCTGGACAATGATAGGTGCTCAGTCTGCTCTTGTCAGACTGGCCGGGTGATGTGCAGGAGgatggtgtgtgactgtgagaaCCCGACAGCTGATCTGTTCTGCTGTCCAGAGTGTGACCCTCGCCTCAGCAGCCAGTGTCTGCACCAGAACGGCCTGCTGACCTACGGCAGTGGAGACACCTGGGTGGAGAACTGCCAGCAGTGCCAGTGTCTGCAGGGACAGGTGGACTGCTGGCCCCTGTTGTGCCCCCATGTGGACTGTGAATTCACGGTGGTGCCCGAGGGCGAATGCTGTGCCCGCTGCGTCACTGATCCCTGCCAGGCCGACACCATACGCAACAACATCACCAAGACGTGCATGGACGAGCACGGCATCCAGCGCTTCAGCGGGTCCTCATGGGTCAAACACAGCACCGAGTGCACCCTCTGCCAGTGCAAGaaTGGACATATCTGTTGCTCAGTGGACCCCATGTGCCTTTAGTTCCTGAAGCTCTGAAGGCACCTCCCTGTACAGTGTTATCCATGTAAAAACAACCAGCGTTTTCCACCCTCCAGCCCAACTTCTTTATACCAAATACAAAACATGTATCATAGAACACAGATGGACTACAGTACCCACAAGCCCCCTCTGTGTTCAGCCTCACCAATCAGGGTGACCTGTGTGCATTGAGGAACACCCCCAAATCATCTGCAACACGACGCTGTAAAATACTATTATACTGGCATGAATGTGCTCGATGTAGAAACATTTTgctcatttatagactcttttaATGTCAATGATGTCCTAGATAGTGGTTGTTTTAGTGTAAGTTTCATTTGCTACACTATTAAAGTTGTCGATATTTTGTGGTCCTCTAGCATTATTTTCTATTCATCTTTTACATTTATTTCCAGGCTTGTTAATGTGTAATGGTGAATAAAGTATTTCAATTTACATGAA

Function

NR:

description
protein kinase C-binding protein NELL2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589385.2 False 3236 mRNA 0.52 20 22024629 22107857
XM_036970165.1 True 3090 mRNA 0.52 19 22024646 22107857

Neighbor

gene id symbol gene type direction distance location
LOC110508592 LOC106613751 coding upstream 113113 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding upstream 197500 21819189 ~ 21827129 (+)
LOC110508526 bsg coding upstream 221726 21792456 ~ 21802903 (+)
LOC110508358 LOC106573608 coding upstream 239385 21779741 ~ 21785244 (+)
LOC110508215 LOC106573607 coding upstream 277440 21733594 ~ 21747189 (+)
LOC110508905 twf1 coding downstream 104475 22212332 ~ 22226104 (+)
LOC110532091 LOC106573613 coding downstream 173232 22281089 ~ 22422282 (+)
zgc:110339 LOC106573615 coding downstream 324453 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 512809 22620666 ~ 22623478 (+)
LOC110510174 LOC106573623 coding downstream 605817 22713674 ~ 22869379 (+)
G21229 NA non-coding upstream 61472 21962939 ~ 21963157 (+)
G21214 NA non-coding upstream 71757 21952531 ~ 21952872 (+)
G21210 NA non-coding upstream 76085 21948188 ~ 21948544 (+)
G21203 NA non-coding upstream 85300 21939123 ~ 21939329 (+)
G20920 NA non-coding upstream 137545 21886629 ~ 21887084 (+)
G21528 NA non-coding downstream 132034 22239891 ~ 22243715 (+)
G21533 NA non-coding downstream 141494 22249351 ~ 22249637 (+)
G21545 NA non-coding downstream 159898 22267755 ~ 22267975 (+)
G21573 NA non-coding downstream 208634 22316491 ~ 22316704 (+)
G21578 NA non-coding downstream 218573 22326430 ~ 22326650 (+)
G20773 NA other upstream 456441 21567545 ~ 21568188 (+)
G19400 NA other upstream 1714731 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1747734 20276590 ~ 20276895 (+)
G19359 NA other upstream 1781754 20242645 ~ 20242875 (+)
G19083 NA other upstream 2108797 19915586 ~ 19915832 (+)
G23109 NA other downstream 1430539 23538396 ~ 23538863 (+)
G23135 NA other downstream 1466735 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 1765164 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2396798 24504638 ~ 24506125 (+)
G24123 NA other downstream 2442668 24550525 ~ 24552435 (+)

Expression


Co-expression Network