LOC118946025 (LOC106604946)


Basic Information

Item Value
gene id LOC118946025
gene name LOC106604946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21819189 ~ 21827129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041163.1
ggtagcatcaacattatgtacaaaataagttacaaacagtgtgaaaaaacacacaaaatagcacaattggttaagagcccgtaaaacggcagacatcccctccggcgccattcttCTGAATTAGCAAATGTGCCTAACGTTAGTGATTagcgctaactagctaacattatttAACATTAATTAACATGTCACCACAGGGAAAAGTGTGACTACATATGAACGGTGacctaacgttaactagctggctatcaAAGGACTTGTGGGTTCAATGTTTTCCCATACAAAACACAAAACGGTTTTGTTCCACGAGTGCATCTGTACACGACTAATCAAATGACCTGTGAAGTCAGTTATACACGTCAACAGGGATGGAAATTAAACTAGCCCAAGGATAGTACTTTTCAGACTGGGCTAGTAGACAATGTGCCAAACTAGCCTGACACAACAGTGAAATGGCTAGTAGAAAATGTGCCAAACTTTACAAACATCGCATGCCACAGATTTAGGACCCGGGCTAGTAGAAAATTGTTGTCTGCTGGCCAGTGCCCAAAATCCTTATGTTCCATCCCTGCATGTCAGTCCCTTTCAGATGATCCCCCTATCACTGTTTGTCCTCCTCAATGACCTCACCGCTGAGGGTTTTAACTTCCCCCTTGATAATTAGAATCAGAAGTACAGTCATATAGCTCATCACAATACTAAACCTCTTCGTCAAATAGTACCCTAGACAGTCCTGATCATTTAGTTGAGCATTCCTGATAATTCCATCCCAGCAGAAATGTCCcattcacattgtaggattttagaTGTGCAGATAGATGAAAGCCCAGTCCATTTTACAGTTACTTTAGTCAAGTGTAGGTCTGTGGGTTATGGAATTTTAATATAGATTTGACCATTTTAGTAATcaacttagctagctagtaaaagttaaaatgttttttatttcagATTGGTGGACCGGAAACCCAGTGGCAACAatcaggtctgtatctgtcaTTTTCCAGTGGGAAAGAGAAATGGCCCTGTATTTACCAGAGAAAGATCCAGACTGTTGATTGGGAAAAAAGAACAAACAATGAGGCATGAGGATTGGGTGTTGAGGGACCATTTGTCACATTGTCCAAGGTGGGTTTGTATTATGATAAACAATGCATTTTCTGTCCAGATAAAGATGTTGATAGGGCATTGAGAAAGACCCACCACTGACCTAATGTCTCTTTGTTTTCCAGTCCAAAAGGAGTGCATCCCTTGTGCCATCTGGTGCACGGACATCCTTTGCCAGTGTGATCCGAGTGCAAGTGTCAAGTTGTAGAGACTACAACAGATCGAGCCTGTGGACGGACAGACATGAGGAGTGACATGCGGAACACCAGGCTCACCCCACGAGAAGCAGTGCATAATCAACACCATCCTCAGCAAGAAGATATGCTGGAAATGATGTACTCTCTCTAACTCTGGGGTTGCTGACAAGCCGAGCAATAGGAGTCTGTCAGACGTTGTCACGctggatggggatggtgatggAGGATTTGGTGGTTCACACAACGAAGAAGCAGATATCCCTTCCAGTGATGTGGAGTTGACGTTGGACCTGGTGCCAGGAAGGATTGTCTTCACAGAGGCAGTAAAACCCTCCTTCCTTCATATAGGAATCCTTCAACTTCACTGTCTCTTCAATAGTAAGGTCCCTTGCACCATAGGGACACTTGACCTCCAACACAGCTGTGGTGCCCACCCAGAATCCCAGTCCCCGTGAACAAAAGCCCTCCTGCACATCCATCCCTGTAGCCATTTTAAATGCCTTGATGCCCTCCTCTTTGTTACCTGTGCCCCACTTTACAGACACCCATCCAACAACTGTGATCTGAGGACCCTTTTTTAGCAGTGATGGAGTAACACGCTTGGCCCTAACCACTGCTCCATAATTTATGGCTGTCAACCTCCATCTTCTCATGGTGTGTCAGTTGGGGTTGGTGCACTGTCGAACTGTTGCCTGCCATATAGCTTTCGGCTGCTCCACCAACAGCTCCATGCCAACCAGGATGCCGGCTTGCCCAATGtgcctttattttttatttttattttttttacaatttccaGTACAGACAGGGATGACAGGGAGGGTAGCAGTTGTTCTGGCTCAGTTTCAGGGAGACATGCCATTCCACTGAACCTGCCCCAGAGATGGTTCCTTAGCTACTGAAGATCCTCCTCTGTGGGCTCTCGGGACAGAGGGTTGTAGTCTTCGGCCAGGTACAGGTCCTCCACTGACTGCACCTAGTTGGGCACGGCTGGCTTCCTCCACTAGCATTCCACATCCGTACGGCTGATATTGTGACCCACCAAAATAGGCTTCATGGCTACCTGTATGAGCTCCACGGAGGCATAGAGGGAATCACCTGGTCACCTACAGAGACCTGCCAAGATGGAAGATGTTAAGTGCCACATGCCTTTCAATACATTCATTTGAACACCTTAAAATACATTTGTTGTAaaaaatgtgctgtataaataaagtttgatttgaatgaTGACAGAATCTGGTTAATGATAATTGATTAAGTGTATCGTTCTTTGTAGAATGTTGACAGGTCAATGGCAGGCAGTGGTCAacaatccagatcagagtccgaaacaggagacaaagggctgtgagacatagttttaatcctagacacatgaaaagtgggatgtatacggagggtacggggcaacagaagatgAACAGCAGAAGGGGCTAATCATTGTGGGGATGGGGAAAGGGCCAGTAAAATGGGGGGAAAGTTTGCAGGActccacccggaggggcagatcTCAAGTAGACAGCCATACCCTCTTCCCGAGACGACACCGGGGAGCCGAAGTCCGGTGTCAGTCCGCTTGTCGCCGATACCTGGAGGTAGTCTTGAGAAGAGCCGActgggctctcttccaggtacggcgacagtggcggacaaacatctggCCCGAGGGTATGCCGGCCTCTTCCTCTTGCTCCGGGAAGAGCAGGGGAGGGTGTTGCCCTCGAAAGGCGAGAGTCCGGTGGCAGAGCAGGGGAGGGTGTAGCGGGCTTATTCAACACAcacgagttgctggctccaggtggtggggttggcggagacAAGGCAGCGAAGAGTGGTCTCAAGGTCTTGATTGGCTTGCTCTGACTGGCCGTTGGACTGAGGGTGGaacccggaggacaggctggccgacgacccaatgagtgtgcataacgccttccagaaccgggactagaactgaggaccccggtcggagaccatgtccaccgggagtccatggatccggaagacgtgctgcaccatgagctgggccgtctcttTGGCATAGGGtagcttggggagaggaatgaaatgGGAGGCTTTGGAAAACAGGTCCTCTACTGTCAGGATTGCAGTGTTGACATCAGACGGCGGGAGACCTGTGGAGAGGTCCAGGGATATGTGAGACCAGGGACGGTGAGGGACAGGCAATGGTTGAATGAGACCAGCTGGAGCTTGCCAAGGAGTCTTGTTCTGCGCACAGATCGTGCAGGCAGCGATGAATGCGGAGATGTCACCAAATGGTAGGTCACCAAAAGCGTTGCCGCACAAAGGCCAGGGTCTGATGGGAGCCCGGGTGGCAGTCTAGCCTGGAGGATAGGTCCCACTCCAGGAGCGAGGGGTGGACAGCATCAGGATCAAACATCTGGTTATGTGGGCCCCCCAGGGTTTTGCTGGGAACATTGCACCTGATGGACCTGCTTCTCTATTCCCCAGCTGATTAACGTCGCCAGGCACGAGGAGGGAAGGATGGTCTCGGGGTCCGAGGGTGTAGCCGCGGGGCTATAGTGGCATGGCAGCGCATCCTGCTTGATATTCTTGGATCCCTGTtggtaggagagggagaagttAATCCAGGTGAAAAGCAGGGCCCACCTAGCTTGCCTGGAATTGAGACGCTTGGCGGTGTGGAGATAGTCCAGGTTCTTGTGATCAGTCCACACAATGAACGGATGTTCCGCCCCCTCCAACCAGTGTTTCCACCCCTACAACGCCATCTTCACTGCGAGAAACCCCACATCGTAATTCCTCTCTGTGGTGTTTAGGTGATGGGAGAAGAAGGCGCAGGGGTGTAACTTGAGGTCAAGGgcagaacgctgggacaggacagccccactccgacatccgaagcatcggcctccaccacgaactgacgGGACGGGTCAGGAGGAACCAAtatgggagctgtggtgaagcAGTGCTTGAGGTCCCGTAATGCccggtcagcagctggggaccacGTGAACGGAACCTTGGGCGAGGTGAGTGCATACAGcggggaagccagggtgctgtagcccCGGATAAAGTGGCTATAAAAGTTGGCAAAATTCCAGGAAACGTTACACACTGCACTCTGGACGTAGGCTGGTGCCAGTCCACTACCGCTCTCACCTTCACGGGATCAATCTGTTAATTTCCTGCAGCGATGATGTAACAAAAGAAGGGGATGGAATTCACATTTCTCTGCTTTCacaaaaagctggttctccaggaggtgcTGGAAGACCTGTCGGACGTGGAGCACGTGTTCTTGGGCTGAGTGGGAGAAAATGAGGATGTCGTCGAGGTAGACGAAgacgaaccggttcaacatgtcgcGGAGAACATCCTtaaccagggcctggaacacagCTGGGGCATTGGTAAGGTCGAATGGCATGACCAGATATTCGTAGTGACCGCTGGCTATAttgaaggcagtcttccactcgtcccttCCCTGAATCCGCACCAGATGGTAGGCGTTCCGCAGGTCAACTTGGAGAAAACGGTGGCCCCCTGGAGTGGCTCGAAGGCCGAGGTGATGAGTGGTAGCGGGTAGCAGTTATTCACTGTGATGTCATTGAGGCCCCGGTAGTCGATGCACGGGTACAGGGTTTTGTCCTACTTCTCCACAAAGTAGAACCCTGTGCCGGCGGgggaggcagaaggacagatACACCCTGCAGCTACGGAGTCCTCAATGTAgttctccatagccttggtctccggacCCAACAGAGAGTACAGTCGTCCCTGGGGCAGGGTGGTGCCAGGGAGAAGGTCGATCCCACGGTCATAGGGTTGATGCGGAGGAAGTgaagtggcccgggccttacTGAAAACCTCCTGTATATCCTGGTATTCCGCGGGAATGGCAGAGAGGTCCGGGAGAACTACCGAGGCCACAGGAAGACTTCCCAGGGCAGGCTGCGCTGACTTCAAGCAATGGATGTGGCAGAACaggctccagcccatgatggctcCAGCAGTCCAGTTAATGAGGGGATTCTGTCGCTGGAGCCAAGATGATCCCAATACCACAGGAACCTGAAGAGACTTAATTAGCATGAATTGGACTGCCTCGCTCTGTTTCCCTGACACtcgtaggttgatgggagtggtattgtgggtgacccggcctatagagtGCCCGTCCAGTGCTCTAAGAtgcatgggaatggagaggggctcaGTGGGGATGCCCAGTTCGGACACCATGATAGCTTACATAAAACTCCCATCGGCCCCAGAGTCGATGAGTACGCAGAGAGATTTCGACTGGTTACCCTACAGCAACATGGCATGGAAAGGGGTGCGAGTAAGGGGAGAGGAAATGTTCTCcttatggcccaccagagtactcgtcCCTACTGGTGAGCCTGATCTCTTAGTGGACAGGAGGACACATAATCACCAGTAGTCCCGTAATACAGGCAACTCTTCGTGTGAAGCCAGTGTAGGCATTTGGCTGGGgacagcctagctctgcctagttgcatcGGCTCGGGAAGAGGTGAATTGGCAGACTTTGGAGACTCTCGGGTAGCCTCGGGTCCTCTCGGCCATGGATGACGTCGGTGTCTTCCGGGATACCTCAGAAGCGAGGTGAAATCTTTGGGAGGGCGTGTGACCTCCTCCTTCCTACATTACTGTAGCCTCCCATCGATCCAGATGGTCAAGGTAATGAGCGAGTAGAGATCCGTCGGTAGTTCTCAGGCTGCTAGCTCGTCCTTAACTTCCTCCGATAATCTGTGCAGGAACGTGTCGAACAGCGATTCCAGGTTCCAGGCACTGTAAGTTGCCAGAGTCCAGAAATCCcccgcatagtctgccacactgagggagtcTTGCCAAAGCTGCAGTAACTACCGGGCAGCCTCTCTCCCAGACAATGGAGAATCTAAAACCTTCTTCACCTCCaccacaaactcctccagactgaagcatttggCCGACTGTTGTTCCCACACGGCCGTAGCCCAGGCGAGAGCCCTCCTGGACATCAGCCTGATAAGGTACGTTATCTTCGAGCGatccgaggggaaggaggagggctgcagTTCGATGATGAGAGAAACGCCGGACAGGTTCCCGACTCTCCAGCGAAGCATTCTGGGGGAGGTAAGCAGAGTTATCGGGAAACCGGGGGTGGCCGGGGTGGCCGTGCTGCTAACAGccgggttactgaggggctgggaggttaccaTCGTGGTAGGCGGCCAGACAGACAACCTGCGGAATTCCTCCAGCAATGTGTTCAACATGCGGTCATGGCGTTCGGCCAAGGTTTGGAACCCTTCCATAAGACCACGAAGCAACTCCTCAtgccttccaatggtggctccttgggaggagagggcattgcggagctggtccgagtctgctgTCCGTCATGgccagacccagatgcagacagtgtcgatgtaagaaaagtttattacaaaaacagtGGGGCAGGCCAACAACAGgccaagggcaggcagaggtcagcaatccagagcagagtccgaaaggtacaaaacggcaggcaggctcagggtcagggcaggcagaggtcagtaatccagggtggtgtgacaaggta

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041163.1 True 6912 mRNA 0.52 3 21819189 21827129

Neighbor

gene id symbol gene type direction distance location
LOC110508526 bsg coding upstream 16286 21792456 ~ 21802903 (+)
LOC110508358 LOC106573608 coding upstream 33945 21779741 ~ 21785244 (+)
LOC110508215 LOC106573607 coding upstream 72000 21733594 ~ 21747189 (+)
LOC110507802 LOC106573603 coding upstream 187895 21605024 ~ 21631294 (+)
LOC110512702 LOC106573599 coding upstream 463331 21353302 ~ 21355858 (+)
LOC110508655 LOC100380741 coding downstream 197500 22024629 ~ 22107857 (+)
LOC110508905 twf1 coding downstream 385203 22212332 ~ 22226104 (+)
LOC110532091 LOC106573613 coding downstream 453960 22281089 ~ 22422282 (+)
zgc:110339 LOC106573615 coding downstream 605181 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 793537 22620666 ~ 22623478 (+)
G20848 NA non-coding upstream 54002 21759701 ~ 21765187 (+)
G20810 NA non-coding upstream 119904 21694253 ~ 21699285 (+)
G20800 NA non-coding upstream 134891 21683395 ~ 21684298 (+)
G20799 NA non-coding upstream 181828 21635497 ~ 21637361 (+)
G20783 LOC106613744 non-coding upstream 214789 21587199 ~ 21604400 (+)
G20880 NA non-coding downstream 4781 21831910 ~ 21832960 (+)
G20920 NA non-coding downstream 59500 21886629 ~ 21887084 (+)
G21203 NA non-coding downstream 111994 21939123 ~ 21939329 (+)
G21210 NA non-coding downstream 121059 21948188 ~ 21948544 (+)
G21214 NA non-coding downstream 125402 21952531 ~ 21952872 (+)
G20773 NA other upstream 251001 21567545 ~ 21568188 (+)
G19400 NA other upstream 1509291 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1542294 20276590 ~ 20276895 (+)
G19359 NA other upstream 1576314 20242645 ~ 20242875 (+)
G19083 NA other upstream 1903357 19915586 ~ 19915832 (+)
G23109 NA other downstream 1711267 23538396 ~ 23538863 (+)
G23135 NA other downstream 1747463 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2045892 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2677526 24504638 ~ 24506125 (+)
G24123 NA other downstream 2723396 24550525 ~ 24552435 (+)

Expression


Co-expression Network