LOC110508526 (bsg)


Basic Information

Item Value
gene id LOC110508526
gene name bsg
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21792456 ~ 21802903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969779.1
GACGTCATTGACAAGATGGCAGAGAGCAATCCCTTAATTGAAGCTGAACCTATGGAGGTATACAACCAGACCTCTGCTGTCCTCTCATGCAAACTGACCGACCCCCCGTCCACAGTCAAAGGCCACTACTGGATGAGGAACGGCAAAGTGATCGAGTCATCCAAGCATAACTTGCCAACTCTCTACACCGAGCACACCTTGGCTAAAATCGATTCCCATTCCGGTGGATTGTATGAGTGCGTCTTCCTTTCTGAGCCCGAGGTGAAAACAACCATTGAAGTCAAAACTGCTCCCCTTGTCTCTGCCTACAAACGCTCTGAGCATGGTAACGAGAAGGACAAGGGTGTGCTGGTGTGTATTAGTTATGGATACCCACTGCCCACTGACTGGAAGTGGTACAAACTGGAGGGAGAAGATAAGACGGCCATCACCAACGGTACCGACAGGTATGAGATCAAGAGCACCCCCAACAGGACCACCCTGACCATTGACAACCTGGACATCGCCATGGACATAGGCAACTACATTTGCGACGGCACGAGCGAGTTCGGCTCGACCTCCGACAAGGTCCACCTGCGCGTCCGCAGCCGGCTGGCCGCCCTCTGGCCCTTCCTGGGCATAGTGGCTGAGGTCATCATCCTGGTCAGTATCATCTTCATCTATGAGAAGAGGAGAAAGCCTGATGAGATCAACGACGATGATGACTCAGGATCTGCTCCcctGAAGAGCAATGCTAACACAGACCACAAGAACAAGGACATCAGGCAAAGGAACTCCAActgagagaagatgagagATATCCTGATGATGACCTTCCAGGATCTATGAGGGGCATTGGGTTGTTGAGTGTTACGTAATATAGTGCGCCCTGTGATTTTTAAACAACTTTTCAGTGTTAATGTCTTGAGAAATTGACTGATTttcctctatatttctctctgtatTGTGCTGCCAGGGAACATGTTTCAGTTTAAGGCCATGGGATTAAAATGGCATGGTTTTTATTGCCGTTCTAGAAGTGAAATCCATTGTAAACGTTTACATGAGAATGATTGGTGTTTTTTCTGTTTGTTCTTATGACTTCCTCcactgtgtatatgtatgtatgtatttatgtatgtgtgtgtgtgtgtgtgtatgtatatatttatgcatatatatatatatgtata
>XM_036969893.1
TGAAGTAGCTATGCTATGACTCTTCCTTAACAGGCTGACAAGGGTGAAAGACAATTTGCTATCCCTTAATTGAAGCTGAACCTATGGAGGTATACAACCAGACCTCTGCTGTCCTCTCATGCAAACTGACCGACCCCCCGTCCACAGTCAAAGGCCACTACTGGATGAGGAACGGCAAAGTGATCGAGTCATCCAAGCATAACTTGCCAACTCTCTACACCGAGCACACCTTGGCTAAAATCGATTCCCATTCCGGTGGATTGTATGAGTGCGTCTTCCTTTCTGAGCCCGAGGTGAAAACAACCATTGAAGTCAAAACTGCTCCCCTTGTCTCTGCCTACAAACGCTCTGAGCATGGTAACGAGAAGGACAAGGGTGTGCTGGTGTGTATTAGTTATGGATACCCACTGCCCACTGACTGGAAGTGGTACAAACTGGAGGGAGAAGATAAGACGGCCATCACCAACGGTACCGACAGGTATGAGATCAAGAGCACCCCCAACAGGACCACCCTGACCATTGACAACCTGGACATCGCCATGGACATAGGCAACTACATTTGCGACGGCACGAGCGAGTTCGGCTCGACCTCCGACAAGGTCCACCTGCGCGTCCGCAGCCGGCTGGCCGCCCTCTGGCCCTTCCTGGGCATAGTGGCTGAGGTCATCATCCTGGTCAGTATCATCTTCATCTATGAGAAGAGGAGAAAGCCTGATGAGATCAACGACGATGATGACTCAGGATCTGCTCCcctGAAGAGCAATGCTAACACAGACCACAAGAACAAGGACATCAGGCAAAGGAACTCCAActgagagaagatgagagATATCCTGATGATGACCTTCCAGGATCTATGAGGGGCATTGGGTTGTTGAGTGTTACGTAATATAGTGCGCCCTGTGATTTTTAAACAACTTTTCAGTGTTAATGTCTTGAGAAATTGACTGATTttcctctatatttctctctgtatTGTGCTGCCAGGGAACATGTTTCAGTTTAAGGCCATGGGATTAAAATGGCATGGTTTTTATTGCCGTTCTAGAAGTGAAATCCATTGTAAACGTTTACATGAGAATGATTGGTGTTTTTTCTGTTTGTTCTTATGACTTCCTCcactgtgtatatgtatgtatgtatttatgtatgtgtgtgtgtgtgtgtgtatgtatatatttatgcatatatatatatatgtata
>XM_036969836.1
cgcACAGGGCGTGACGTGCTAGTTCACGACGTGAGGAACAACGACTAACTCGTCGATGGTATAGCAAGGGAGTCGAGATAAGATCAAATATTTGAAAAATAGTGTAATTGACAGTATATCTGTGACAGACTAAAAACAATGAAAGTGCTGTGGGGTTTAAGTGCCCTCCTATTGTGCTTGAACCGAGCCAATGCCCAGACAGATCCCTTAATTGAAGCTGAACCTATGGAGGTATACAACCAGACCTCTGCTGTCCTCTCATGCAAACTGACCGACCCCCCGTCCACAGTCAAAGGCCACTACTGGATGAGGAACGGCAAAGTGATCGAGTCATCCAAGCATAACTTGCCAACTCTCTACACCGAGCACACCTTGGCTAAAATCGATTCCCATTCCGGTGGATTGTATGAGTGCGTCTTCCTTTCTGAGCCCGAGGTGAAAACAACCATTGAAGTCAAAACTGCTCCCCTTGTCTCTGCCTACAAACGCTCTGAGCATGGTAACGAGAAGGACAAGGGTGTGCTGGTGTGTATTAGTTATGGATACCCACTGCCCACTGACTGGAAGTGGTACAAACTGGAGGGAGAAGATAAGACGGCCATCACCAACGGTACCGACAGGTATGAGATCAAGAGCACCCCCAACAGGACCACCCTGACCATTGACAACCTGGACATCGCCATGGACATAGGCAACTACATTTGCGACGGCACGAGCGAGTTCGGCTCGACCTCCGACAAGGTCCACCTGCGCGTCCGCAGCCGGCTGGCCGCCCTCTGGCCCTTCCTGGGCATAGTGGCTGAGGTCATCATCCTGGTCAGTATCATCTTCATCTATGAGAAGAGGAGAAAGCCTGATGAGATCAACGACGATGATGACTCAGGATCTGCTCCcctGAAGAGCAATGCTAACACAGACCACAAGAACAAGGACATCAGGCAAAGGAACTCCAActgagagaagatgagagATATCCTGATGATGACCTTCCAGGATCTATGAGGGGCATTGGGTTGTTGAGTGTTACGTAATATAGTGCGCCCTGTGATTTTTAAACAACTTTTCAGTGTTAATGTCTTGAGAAATTGACTGATTttcctctatatttctctctgtatTGTGCTGCCAGGGAACATGTTTCAGTTTAAGGCCATGGGATTAAAATGGCATGGTTTTTATTGCCGTTCTAGAAGTGAAATCCATTGTAAACGTTTACATGAGAATGATTGGTGTTTTTTCTGTTTGTTCTTATGACTTCCTCcactgtgtatatgtatgtatgtatttatgtatgtgtgtgtgtgtgtgtgtatgtatatatttatgcatatatatatatatgtata

Function

symbol description
bsg Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in basolateral plasma membrane; endoplasmic reticulum membrane; and lateral plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in intestine and liver. Orthologous to human BSG (basigin (Ok blood group)).

NR:

description
basigin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969779.1 False 1172 mRNA 0.47 8 21792456 21802903
XM_036969893.1 False 1204 mRNA 0.46 8 21792539 21802903
XM_036969836.1 True 1346 mRNA 0.46 8 21793376 21802903

Neighbor

gene id symbol gene type direction distance location
LOC110508358 LOC106573608 coding upstream 7212 21779741 ~ 21785244 (+)
LOC110508215 LOC106573607 coding upstream 45267 21733594 ~ 21747189 (+)
LOC110507802 LOC106573603 coding upstream 161162 21605024 ~ 21631294 (+)
LOC110512702 LOC106573599 coding upstream 436598 21353302 ~ 21355858 (+)
LOC110507602 LOC106573596 coding upstream 489395 21271127 ~ 21303061 (+)
LOC110508592 LOC106613751 coding downstream 6661 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding downstream 16286 21819189 ~ 21827129 (+)
LOC110508655 LOC100380741 coding downstream 221726 22024629 ~ 22107857 (+)
LOC110508905 twf1 coding downstream 409429 22212332 ~ 22226104 (+)
LOC110532091 LOC106573613 coding downstream 478186 22281089 ~ 22422282 (+)
G20848 NA non-coding upstream 27269 21759701 ~ 21765187 (+)
G20810 NA non-coding upstream 93171 21694253 ~ 21699285 (+)
G20800 NA non-coding upstream 108158 21683395 ~ 21684298 (+)
G20799 NA non-coding upstream 155095 21635497 ~ 21637361 (+)
G20783 LOC106613744 non-coding upstream 188056 21587199 ~ 21604400 (+)
G20880 NA non-coding downstream 29007 21831910 ~ 21832960 (+)
G20920 NA non-coding downstream 83726 21886629 ~ 21887084 (+)
G21203 NA non-coding downstream 136220 21939123 ~ 21939329 (+)
G21210 NA non-coding downstream 145285 21948188 ~ 21948544 (+)
G21214 NA non-coding downstream 149628 21952531 ~ 21952872 (+)
G20773 NA other upstream 224268 21567545 ~ 21568188 (+)
G19400 NA other upstream 1482558 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1515561 20276590 ~ 20276895 (+)
G19359 NA other upstream 1549581 20242645 ~ 20242875 (+)
G19083 NA other upstream 1876624 19915586 ~ 19915832 (+)
G23109 NA other downstream 1735493 23538396 ~ 23538863 (+)
G23135 NA other downstream 1771689 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2070118 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2701752 24504638 ~ 24506125 (+)
G24123 NA other downstream 2747622 24550525 ~ 24552435 (+)

Expression


Co-expression Network