LOC110508358 (LOC106573608)


Basic Information

Item Value
gene id LOC110508358
gene name LOC106573608
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21779741 ~ 21785244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588935.2
GCGATTAAGTGTTTCTACGCATGagtttagctagccaacgtcgACATGACATCGTCTACCAGTGTGATttgggatttctattggagaatcATACTGTACTAACTTTGGCTATATCGTAAACATAGAACCAAAAAAATGGCGGAAGCACCTCCATGGCCCAGCCGGTTTTTCTGTCACAGATGTTCGGAAGAGATCAGCCCTCGTCTCCCCGATTACACATGTCCTCGGTGTGAATCTGGCTTTATCGAGGAACTGCTGGAGGAGAGACGCAGTGAAAATGGGTCCACATCCACCATCTCCAGTGGTGACCAGAACCAACATCCATTTGAGAATGTGGACCCTTCAAATATATTTACGTTCCCCTCGGGTTACGGCCAGTTTGCTATGGGTGTCTTTGACGACTCCTTTGACTTCGGAGCGGGGCTGGGAGGAGCTGGGTTGGGAGGAGCAGGGCTAGGAGGAGCTGGGTTGGGAGGAGCAGGGCTAGGAGGAGCTGGGTTGGGAACAGAGGACAACCGCGACGCAGAGAATCGTCGAGAACGGGAGATGGCATCACGGCAGCGATACGGCGCCAGGCAACCTCGCGGTCGCCATGGCGtcaggaggcaggcagggagaccggagggagTGCCCACTTTAGAGGGAATCATTCAGCAGCTAGTGAATGGAATAATCGCCCCTGCGGCAGTGCCAAATATTGGTGTGGGACCCTGGGGCGTGCTTCACTCAAACCCCATGGATTACGCCTGGGGTGCCAACGGACTAGATgcaatcattacacagTTATTAAATCAGTTTGAGAACACTGGCCCTCCGCCAGCTGATGGGGACAAAATCATGAGCCTTCCCACAGTCCTAATCACACAGGAGCATGTAGGCTCTGGTCTAGAATGTCCAGTGTGTAAAGAAGACTACAGTGCTGGAGAAAACGTTAGGCAACTTCCATGTAATCATTTGTTTCACAATGATTGCATAGTACCCTGGCTTGAACAGCACGACACATGTCCAGTGTGCAGGAAAAGCTTAAGTGGACTGAACACAGCCATGAATCCTCCAGGTCTATCAGGGATGAactttgcctcttcctctgcACCCCCGTCCTCCAGCTCAACCAGCAATGAGAACTCGGCCAACAACTCCTAAAAAAACATTTCCCTTCCCACACAACCCAGTGAACTGCCCCTCCTCAGCCAGTTGGGTACCAGTCTCACCCTGTCAAGGGGAGCTGAGAGCAACCACCCAGTCTCCTCCTCACCTGGATCACTGCCTCACACTGGACCGGAGCCAGCAGGAATCCAATTAAATTAAAGTCAGTATGTTTCTGCCCCAACCGAGGCTCTCCTCAAGCCTTCAGGAATGTTGCTTCTTGCTGCGTGGAAGGATGGATTCGGCCCTCTGCCTGGGGAAGATATGGAGGATAGGAACATTAGGAGGGTCACTCTCTGGATAACCTCAACATGCAACAACAGAACAAGCCAGTTAGTCCTTCATTCTgaggggagactgggggagagatcTTTCTGGTCTTCTCTCACCAAGtcggttgttttttttaaatattttttttgacaTGTTTTATGAGCATTCATATTTGTATTGCTAAAGTTCTTAAATGAAAACTTTCAGGAGGAAAGGAGGCTGAGTATAGGATGTATACTTGGTTTGGATTCTGCAGCTATTTTTTCCATGGATTGGAAACATCTATCAAATTTGAAGTGTTTTTCTCAAACAGAAAAGCGTTTACCCTTCATACAATGTACTTTTACATTGAATGAACCAACCCCCAATCATTTTCTTATTGACTGAAGTTGTATGTGCACCATTGTTTTGCCCTTTGAATTAAGAAACAAACTACATTTGGCTATGTGTTTTTTGGAGAACTGACTTGGGTGCTGGATTAAGTCAAAGGTTACTACATTCCTCTTTGTAACGACAGAGGTAAAGATCCAGTAGTTAACCTGCTAGACAGATTCTAACAGCATTTTCTCATCCGATCATACATAATCAGCAAGTTTCAGTGAATTggtttttttcaattttttatttttttaaaattctaAGTGAATTCAATGTTTTTGTACAATTCACAGTAGACCAGTGAAATATATAGATTTGCAGATCATGTAAAACCCTGAACAAGACATGAACTGATGAGAAAATAAAGATGTTTAGGTGCTACCACTGTAATACAAAATGTCTGTTATGTGGTGGGCCGTAGTAAGC
>XM_021589012.2
GAAATAcgtttagcagtgtggttaatgttaggtttaaaatcagattttaagaagataatTGTAGAAATAGTCTGGGTTTATCCATAATtacgactttgtggctgtggtaactagtgacgaccctcCAACTGAATCCTTCAACAGAGAACCAAAAAAATGGCGGAAGCACCTCCATGGCCCAGCCGGTTTTTCTGTCACAGATGTTCGGAAGAGATCAGCCCTCGTCTCCCCGATTACACATGTCCTCGGTGTGAATCTGGCTTTATCGAGGAACTGCTGGAGGAGAGACGCAGTGAAAATGGGTCCACATCCACCATCTCCAGTGGTGACCAGAACCAACATCCATTTGAGTTTGCTATGGGTGTCTTTGACGACTCCTTTGACTTCGGAGCGGGGCTGGGAGGAGCTGGGTTGGGAGGAGCAGGGCTAGGAGGAGCTGGGTTGGGAGGAGCAGGGCTAGGAGGAGCTGGGTTGGGAACAGAGGACAACCGCGACGCAGAGAATCGTCGAGAACGGGAGATGGCATCACGGCAGCGATACGGCGCCAGGCAACCTCGCGGTCGCCATGGCGtcaggaggcaggcagggagaccggagggagTGCCCACTTTAGAGGGAATCATTCAGCAGCTAGTGAATGGAATAATCGCCCCTGCGGCAGTGCCAAATATTGGTGTGGGACCCTGGGGCGTGCTTCACTCAAACCCCATGGATTACGCCTGGGGTGCCAACGGACTAGATgcaatcattacacagTTATTAAATCAGTTTGAGAACACTGGCCCTCCGCCAGCTGATGGGGACAAAATCATGAGCCTTCCCACAGTCCTAATCACACAGGAGCATGTAGGCTCTGGTCTAGAATGTCCAGTGTGTAAAGAAGACTACAGTGCTGGAGAAAACGTTAGGCAACTTCCATGTAATCATTTGTTTCACAATGATTGCATAGTACCCTGGCTTGAACAGCACGACACATGTCCAGTGTGCAGGAAAAGCTTAAGTGGACTGAACACAGCCATGAATCCTCCAGGTCTATCAGGGATGAactttgcctcttcctctgcACCCCCGTCCTCCAGCTCAACCAGCAATGAGAACTCGGCCAACAACTCCTAAAAAAACATTTCCCTTCCCACACAACCCAGTGAACTGCCCCTCCTCAGCCAGTTGGGTACCAGTCTCACCCTGTCAAGGGGAGCTGAGAGCAACCACCCAGTCTCCTCCTCACCTGGATCACTGCCTCACACTGGACCGGAGCCAGCAGGAATCCAATTAAATTAAAGTCAGTATGTTTCTGCCCCAACCGAGGCTCTCCTCAAGCCTTCAGGAATGTTGCTTCTTGCTGCGTGGAAGGATGGATTCGGCCCTCTGCCTGGGGAAGATATGGAGGATAGGAACATTAGGAGGGTCACTCTCTGGATAACCTCAACATGCAACAACAGAACAAGCCAGTTAGTCCTTCATTCTgaggggagactgggggagagatcTTTCTGGTCTTCTCTCACCAAGtcggttgttttttttaaatattttttttgacaTGTTTTATGAGCATTCATATTTGTATTGCTAAAGTTCTTAAATGAAAACTTTCAGGAGGAAAGGAGGCTGAGTATAGGATGTATACTTGGTTTGGATTCTGCAGCTATTTTTTCCATGGATTGGAAACATCTATCAAATTTGAAGTGTTTTTCTCAAACAGAAAAGCGTTTACCCTTCATACAATGTACTTTTACATTGAATGAACCAACCCCCAATCATTTTCTTATTGACTGAAGTTGTATGTGCACCATTGTTTTGCCCTTTGAATTAAGAAACAAACTACATTTGGCTATGTGTTTTTTGGAGAACTGACTTGGGTGCTGGATTAAGTCAAAGGTTACTACATTCCTCTTTGTAACGACAGAGGTAAAGATCCAGTAGTTAACCTGCTAGACAGATTCTAACAGCATTTTCTCATCCGATCATACATAATCAGCAAGTTTCAGTGAATTggtttttttcaattttttatttttttaaaattctaAGTGAATTCAATGTTTTTGTACAATTCACAGTAGACCAGTGAAATATATAGATTTGCAGATCATGTAAAACCCTGAACAAGACATGAACTGATGAGAAAATAAAGATGTTTAGGTGCTACCACTGTAATACAAAATGTCTGTTATGTGGTGGGCCGTAGTAAGC

Function

NR:

description
E3 ubiquitin-protein ligase RNF126-like isoform X2

GO: NA

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588935.2 False 2223 mRNA 0.46 10 21779741 21785244
XM_021589012.2 True 2196 mRNA 0.46 9 21779913 21785244

Neighbor

gene id symbol gene type direction distance location
LOC110508215 LOC106573607 coding upstream 32552 21733594 ~ 21747189 (+)
LOC110507802 LOC106573603 coding upstream 148447 21605024 ~ 21631294 (+)
LOC110512702 LOC106573599 coding upstream 423883 21353302 ~ 21355858 (+)
LOC110507602 LOC106573596 coding upstream 476680 21271127 ~ 21303061 (+)
LOC110507530 LOC106573595 coding upstream 512087 21194656 ~ 21267654 (+)
LOC110508526 bsg coding downstream 7212 21792456 ~ 21802903 (+)
LOC110508592 LOC106613751 coding downstream 24320 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding downstream 33945 21819189 ~ 21827129 (+)
LOC110508655 LOC100380741 coding downstream 239385 22024629 ~ 22107857 (+)
LOC110508905 twf1 coding downstream 427088 22212332 ~ 22226104 (+)
G20848 NA non-coding upstream 14554 21759701 ~ 21765187 (+)
G20810 NA non-coding upstream 80456 21694253 ~ 21699285 (+)
G20800 NA non-coding upstream 95443 21683395 ~ 21684298 (+)
G20799 NA non-coding upstream 142380 21635497 ~ 21637361 (+)
G20783 LOC106613744 non-coding upstream 175341 21587199 ~ 21604400 (+)
G20880 NA non-coding downstream 46666 21831910 ~ 21832960 (+)
G20920 NA non-coding downstream 101385 21886629 ~ 21887084 (+)
G21203 NA non-coding downstream 153879 21939123 ~ 21939329 (+)
G21210 NA non-coding downstream 162944 21948188 ~ 21948544 (+)
G21214 NA non-coding downstream 167287 21952531 ~ 21952872 (+)
G20773 NA other upstream 211553 21567545 ~ 21568188 (+)
G19400 NA other upstream 1469843 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1502846 20276590 ~ 20276895 (+)
G19359 NA other upstream 1536866 20242645 ~ 20242875 (+)
G19083 NA other upstream 1863909 19915586 ~ 19915832 (+)
G23109 NA other downstream 1753152 23538396 ~ 23538863 (+)
G23135 NA other downstream 1789348 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2087777 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2719411 24504638 ~ 24506125 (+)
G24123 NA other downstream 2765281 24550525 ~ 24552435 (+)

Expression


Co-expression Network