RNA id: XM_021589012.2


Basic Information

Item Value
RNA id XM_021589012.2
length 2196
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110508358
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21779741 ~ 21785244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATAcgtttagcagtgtggttaatgttaggtttaaaatcagattttaagaagataatTGTAGAAATAGTCTGGGTTTATCCATAATtacgactttgtggctgtggtaactagtgacgaccctcCAACTGAATCCTTCAACAGAGAACCAAAAAAATGGCGGAAGCACCTCCATGGCCCAGCCGGTTTTTCTGTCACAGATGTTCGGAAGAGATCAGCCCTCGTCTCCCCGATTACACATGTCCTCGGTGTGAATCTGGCTTTATCGAGGAACTGCTGGAGGAGAGACGCAGTGAAAATGGGTCCACATCCACCATCTCCAGTGGTGACCAGAACCAACATCCATTTGAGTTTGCTATGGGTGTCTTTGACGACTCCTTTGACTTCGGAGCGGGGCTGGGAGGAGCTGGGTTGGGAGGAGCAGGGCTAGGAGGAGCTGGGTTGGGAGGAGCAGGGCTAGGAGGAGCTGGGTTGGGAACAGAGGACAACCGCGACGCAGAGAATCGTCGAGAACGGGAGATGGCATCACGGCAGCGATACGGCGCCAGGCAACCTCGCGGTCGCCATGGCGtcaggaggcaggcagggagaccggagggagTGCCCACTTTAGAGGGAATCATTCAGCAGCTAGTGAATGGAATAATCGCCCCTGCGGCAGTGCCAAATATTGGTGTGGGACCCTGGGGCGTGCTTCACTCAAACCCCATGGATTACGCCTGGGGTGCCAACGGACTAGATgcaatcattacacagTTATTAAATCAGTTTGAGAACACTGGCCCTCCGCCAGCTGATGGGGACAAAATCATGAGCCTTCCCACAGTCCTAATCACACAGGAGCATGTAGGCTCTGGTCTAGAATGTCCAGTGTGTAAAGAAGACTACAGTGCTGGAGAAAACGTTAGGCAACTTCCATGTAATCATTTGTTTCACAATGATTGCATAGTACCCTGGCTTGAACAGCACGACACATGTCCAGTGTGCAGGAAAAGCTTAAGTGGACTGAACACAGCCATGAATCCTCCAGGTCTATCAGGGATGAactttgcctcttcctctgcACCCCCGTCCTCCAGCTCAACCAGCAATGAGAACTCGGCCAACAACTCCTAAAAAAACATTTCCCTTCCCACACAACCCAGTGAACTGCCCCTCCTCAGCCAGTTGGGTACCAGTCTCACCCTGTCAAGGGGAGCTGAGAGCAACCACCCAGTCTCCTCCTCACCTGGATCACTGCCTCACACTGGACCGGAGCCAGCAGGAATCCAATTAAATTAAAGTCAGTATGTTTCTGCCCCAACCGAGGCTCTCCTCAAGCCTTCAGGAATGTTGCTTCTTGCTGCGTGGAAGGATGGATTCGGCCCTCTGCCTGGGGAAGATATGGAGGATAGGAACATTAGGAGGGTCACTCTCTGGATAACCTCAACATGCAACAACAGAACAAGCCAGTTAGTCCTTCATTCTgaggggagactgggggagagatcTTTCTGGTCTTCTCTCACCAAGtcggttgttttttttaaatattttttttgacaTGTTTTATGAGCATTCATATTTGTATTGCTAAAGTTCTTAAATGAAAACTTTCAGGAGGAAAGGAGGCTGAGTATAGGATGTATACTTGGTTTGGATTCTGCAGCTATTTTTTCCATGGATTGGAAACATCTATCAAATTTGAAGTGTTTTTCTCAAACAGAAAAGCGTTTACCCTTCATACAATGTACTTTTACATTGAATGAACCAACCCCCAATCATTTTCTTATTGACTGAAGTTGTATGTGCACCATTGTTTTGCCCTTTGAATTAAGAAACAAACTACATTTGGCTATGTGTTTTTTGGAGAACTGACTTGGGTGCTGGATTAAGTCAAAGGTTACTACATTCCTCTTTGTAACGACAGAGGTAAAGATCCAGTAGTTAACCTGCTAGACAGATTCTAACAGCATTTTCTCATCCGATCATACATAATCAGCAAGTTTCAGTGAATTggtttttttcaattttttatttttttaaaattctaAGTGAATTCAATGTTTTTGTACAATTCACAGTAGACCAGTGAAATATATAGATTTGCAGATCATGTAAAACCCTGAACAAGACATGAACTGATGAGAAAATAAAGATGTTTAGGTGCTACCACTGTAATACAAAATGTCTGTTATGTGGTGGGCCGTAGTAAGC

Function

GO: NA

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24293 lncRNA upstream 14726 21762239 ~ 21765187 (+) True G20848
TU24292 lncRNA upstream 17479 21759701 ~ 21762434 (+) False G20848
TU24247 lncRNA upstream 80628 21694253 ~ 21699285 (+) True G20810
TU24237 lncRNA upstream 95615 21683395 ~ 21684298 (+) True G20800
TU24236 lncRNA upstream 142552 21635497 ~ 21637361 (+) True G20799
TU24326 lncRNA downstream 46666 21831910 ~ 21832960 (+) True G20880
TU24369 lncRNA downstream 101385 21886629 ~ 21887084 (+) True G20920
TU24688 lncRNA downstream 153879 21939123 ~ 21939329 (+) True G21203
TU24695 lncRNA downstream 162944 21948188 ~ 21948544 (+) True G21210
TU24699 lncRNA downstream 167287 21952531 ~ 21952872 (+) True G21214
XM_021588739.2 mRNA upstream 32724 21739990 ~ 21747189 (+) False LOC110508215
XM_036969526.1 mRNA upstream 32724 21739998 ~ 21747189 (+) True LOC110508215
XM_036969584.1 mRNA upstream 33947 21733594 ~ 21745966 (+) False LOC110508215
XM_021588109.2 mRNA upstream 148619 21605024 ~ 21631294 (+) True LOC110507802
XM_021593125.2 mRNA upstream 424055 21353302 ~ 21355858 (+) True LOC110512702
XM_036969779.1 mRNA downstream 7212 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA downstream 7295 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA downstream 8132 21793376 ~ 21802903 (+) True LOC110508526
XM_021589263.2 mRNA downstream 24320 21809564 ~ 21911516 (+) True LOC110508592
XR_005041163.1 mRNA downstream 33945 21819189 ~ 21827129 (+) True LOC118946025
TU24207 other upstream 211725 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1470015 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1503018 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1537038 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 1864081 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1753152 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1789348 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 2087777 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 2087777 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2719411 24504655 ~ 24506116 (+) True ccl4

Expression Profile