RNA id: XM_036969584.1


Basic Information

Item Value
RNA id XM_036969584.1
length 1830
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110508215
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21733594 ~ 21747189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATGCACGTAATTGAAGTGAGGTTAATCCAGTCAATCGCGCcatagcaatgtttttttttatgttggcagggtttacacacacactagctgaatttgcagagccAGCGGGCAAACATCAACTATTaagctagctagtacctattccATTTAAGTGGCGTCGTCAAAGATGGAATCTGCGCTATCGTCAGTTTATTCCAAGATCAGCATACAGCTGTATTGCTTCAAAGTCCTTGTGATAAGGTTAGCGATAAACTGAACTCCCAACTGAACAGAACTGCACTCTCTTCTACCATTGTCTTAAATATCTTTAATGGTCTCGATGCAAAAGCTAAAATGTCGCTATGGGACTTTGAAGCACATATGTGCCGATCTTGGAGTAAACTGACGATAGCAAAGATTATTGCAAACACCACAGAAACGGAATTGGTGCTCGCTAGCTTTGCAAATTCAGCTATTGTTGGAAGCCAGCCAATATGAAACAAACTATATTCAAATTACAAAAGGTTGCAGCATATGTTGTGTAAATGGTGAACTCATACAGCTGTCAACTCTTGTCACTGCAATCCGTTTCACATTTGCTAGCTACCTTTTAGATCGAAGCCCATATAGAATGATAGAAGATAAGATGATAGAAGCCCATATCCTAATGTAAATAAcctacacactgtgtgtgtgtgcagctagccagcctgccaggtagaaaaatgtcagaaaaactataaaaaaatatatttttttcagtacACCAAAACGCAAAGCAAGAACCCTAGTAGCCTAAGACTAGTTGATAAAATGTTCATTAGAAAGAAGTGAAATGCTAATGGAAACGtttcacaatgatgtcattaggcAGATCAGGCAACAgagggcacacagacagcagagctggggacagactggcagagacagggagtctcagCGGGGATGTGTTGGCTGCAGCAGAGCCAAGAGCAGCGCTGTGACATGGTGCTGATGCGTGGGGTCAGCAGGGAGGAATGCTGCTCCGGGGGCCGTCTGGACACGGCCTGGTCCAACACTAGTCTGCCTATCAATGAGGTCAGCCTGCTGGGCTTCCTGGGAATCGTGTCCTGCAAACCCTGCAAAGAGACCTGTGATGGTGTGAACTGCGGCCCAGGGAAGGTGTGTACGTTGAAGGCTGGACGCCCTCAGTGTGCGTGCTCTCCCGACTGCACTAACATCTCCAAAAAGCATGCTGTGTGTGGCAGCGATGGGAACTCCTATCGTGACGAGTGTGTCCTCCTGATGGCCCGCTGTAAGGGACACCCTGATCTGGAGGTCATGTACCAGGGAGAATGCAAAAAGTCTTGCTCCAATGTGGTGTGCCCAGGTACCCACACCTGTGTGACAGATCAGACTAACAGTGCCCACTGTGTCATGTGCCGCACAACCCCCTGCCCAATACCGCTGAAGTCCGAGATGCCTATCTGTGGCAACGACAACATCACCTACCCCAGCGCCTGCCACCTCCGTAGAGCCACCTGCTTCCTGGGGCGCTCCATAGGAGTGCGTCACTATGGCAACTGCACTAGTGTTCCAAGAAACACTCTGGCTTTGGAGGGCAGTGAGGAGAATTCACTCTAACGGGACAGTTCTTGTGTGGTCCAACTGGTACTTCAGTCCACCTGGCACTAGACTTAGCTTAGTCCACCCGGTACGAAGATTTCCAAGAGATCACCTTCGATACGTGAACCAACATTGTCCCGATGTTCACTCACCAAGTTCTGATTTATGTTGACTactttttttacaatcacttatcccctccatccctaccccctgTACATAGAACAATGATACATTTGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24247 lncRNA upstream 34309 21694253 ~ 21699285 (+) True G20810
TU24237 lncRNA upstream 49296 21683395 ~ 21684298 (+) True G20800
TU24236 lncRNA upstream 96233 21635497 ~ 21637361 (+) True G20799
TU24217 lncRNA upstream 129194 21602997 ~ 21604400 (+) True G20783
TU24219 lncRNA upstream 130373 21587199 ~ 21603221 (+) False G20783
TU24292 lncRNA downstream 13735 21759701 ~ 21762434 (+) False G20848
TU24293 lncRNA downstream 16273 21762239 ~ 21765187 (+) True G20848
TU24326 lncRNA downstream 85944 21831910 ~ 21832960 (+) True G20880
TU24369 lncRNA downstream 140663 21886629 ~ 21887084 (+) True G20920
TU24688 lncRNA downstream 193157 21939123 ~ 21939329 (+) True G21203
XM_021588109.2 mRNA upstream 102300 21605024 ~ 21631294 (+) True LOC110507802
XM_021593125.2 mRNA upstream 377736 21353302 ~ 21355858 (+) True LOC110512702
XM_021587735.2 mRNA upstream 430533 21271127 ~ 21303061 (+) True LOC110507602
XM_021587613.2 mRNA upstream 465940 21194656 ~ 21267654 (+) True LOC110507530
XM_036968389.1 mRNA upstream 542413 21148121 ~ 21191181 (+) False LOC110507450
XM_021588935.2 mRNA downstream 33775 21779741 ~ 21785244 (+) False LOC110508358
XM_021589012.2 mRNA downstream 33947 21779913 ~ 21785244 (+) True LOC110508358
XM_036969779.1 mRNA downstream 46490 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA downstream 46573 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA downstream 47410 21793376 ~ 21802903 (+) True LOC110508526
TU24207 other upstream 165406 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1423696 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1456699 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1490719 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 1817762 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1792430 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1828626 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 2127055 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 2127055 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2758689 24504655 ~ 24506116 (+) True ccl4

Expression Profile