LOC110507602 (LOC106573596)


Basic Information

Item Value
gene id LOC110507602
gene name LOC106573596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21271127 ~ 21303061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587735.2
TAGTGTGATGCATTCGGTGTACTCTGGTGGATACAACCTTCAGTAACAGCCCAAAAACGTATTACAATCCAGACAGAACCGATGAAATCTTACTCTGTGGAAAGTAAAAAAACACCCTTTTATTTGAGGTAATATTCCTCCCCGCTCTCTCCTGCATTTTTTTGGGAGTGTTATGGAAGACACAGATGTGAGAGAGCACTGGCCAATGGTGAGCAGACGGGGGCTGGATTAGACTGCACTCTGGGTGTCCCTTCTTTTAAGACTCCTGTTCCCCCGTCTAATTTACAATCTTCATATGGCTGGGTTTAGGGACAGGAGCAGGTTTCCAACCATCATCATTCACACCTGAGAGCACTCAGACTCTGTAGCCTGACATTTTGAAGAACAACACAATTTCCTCTTGACTTGATAATATAttacaagcagagagagagaaggaaagcatCCAAGTGTGTGATTGTGGCACACCATGTGGGACTTTACAAAAGTGTCACTACTCCTGTCTTTCCTGGTGGCAGTGGCAGCGGCTCAAGGGCCCTTCAGGAACAGCTCTCTGCTCAGGAAgtggagtcagacagacaggagcaGGAAGCTGGCCTACAACTTGCTGACTGAGCCACAGCAGACCACAGGCATGACTGAATGGACGTCCTGGTTCAACATCGACCATCCAGGGGGGAATGGAGACTACGAGCGGTTAGAGGCCATCCAGTTCTACTACAGGGAGAGGGTGTGTGCCCGGCCGGTGGCCATGGAGGCCCGCACCACGGACTGGGTGGCAGCAGCAGAGACCGGGGAGGTGACTCACTCCAGCCTGGAGAAGGGCTTCTGGTGCATCAACAAGGAGCAGCCCTACGGACGCATCTGCTCCAACTACTACGTCCGCTTCCAGTGCCCACCAGTTCAGgcctactggatggactggtcTGCCTGGGGCCCCTGCTCTGCTACAGCCTGTAATGACGTGGGCATTCAGGTCCGTCAGAGGAAGTGTATGAGCATCCAGCCCATGCCCTTGCTACTGGTTCCGCCATGCCAGGGGCCCCAGACAGAGAGGATGGAGTGTGCCACCCTGCCATGTGAAGCCAAGTGGACTCAGTGGGGTACGTGGGGAGCATGCTCAGTGACCTGCGGCAAGGGTCGCAGGATCAGAAGGAGGACCTGTGTGAGAACCTCTATAACAGTGCAGTGTGTTGGACGAGCAGCTGAAATCCAGAAATGTGGGAAATATCCATGCCCGAcCAAATGTAAGCGTGAGTGTCCCGATGGCCGTCCCAGTGAGGACTGtagccgctgtgtgtgtgtgggccacaTGCTCCAAGGAGAGGTACTCAGTATGACCGGTGTCCCCGTGATGGGGGCCAGGATAGCGCTGGCCAGCCGACCCAAGATCATCCGTACCCGCACTGACGCCAAAGGCCTCTTCAGGCTCCCAGGGGTCTGCTCCAGTTCCCCCAGCCAGCTCTACATCAGGAAGGAGAAGTTTGCCCCGGCGACTGCATCCACCTCCAGCAACAGCAGTGGGTCATCCTGGGTACGGGCAGTCCTAAAGTACGCAGAGAAGCCATACATTGTAAAGCACCCAGAGGACAAAGTGCGCTATGAGGGACAGCGTGTGATGTTATGCTGCAAGGCAGCAGGGGAGCCCATGCCAGACAAATACTACTGGTATCACAATAGGACCCTATTGGACCGGAACGTGTTCAAATATGAAGAGGATCTGGTGCTGAGAGACCTGAAGCCTGAGCAGACAGGACATTACTACTGTAAAGCCAGCAGCCAGACAGGAAGCATCAAGTCCTCACAGGCATTCCTCAGCGTTATCGCTAAAGGCATTCCGGCATGCAACCCCACACCTAAGAACCACCTCATTAGGCTGCCCATGGACTGTGTTCAGCCTGGGACTGACTCTAAGCTCTACGACGCTGGCCGCTGCACCCACAACAAGTGTGTAGGCTCCCTGGACTTCGACCTGCGCTGCAGGGATGGAGGTGGCTACTGCTGCGGGGTCCAGAAGATGGAGAGCCAGGTGATCAACTGTGGGAGCTACAGCCTACCCATCAAAGCTGTGACTGAGTGTGGCTGCCTGAAGTGTGTGGTGCCCAAGGTGCTTGTGCGTGGCAGGGTAGTCACAGTTGACAACAATGAACCACTGCGTTTCGGGCACATGTACGTTGGCAAGGAGAGAGTGGGCACCACAGGGTACAAAGGAGGTTTCACGCTCAATATaaccccagacacagagaggctAGTGGTCAACTTTGTGGATCCCACAGAAAAATTCATTGACACTCCTAAGGTGTTTATCTTTGACAAGAGAGGGGGCTCTGTTTATCATGACGTGAAGGTGATGAGAAAGCAGGAACCTATTGATATCAATGCTGGAGAGACAAATACCATTGACTTAGGAGAAATCAAAGGAGAGGACCCCATTGGACAGATTGTCATACCTCCAAATTCTTTCCACAAAAAAAATGGGGAGGTGTACGAAGGTACGGTGAAAGCCAGTGTCACCTTCATTGACCCCAGGAACATCACAACAGCTGCTGCAGCGCCTGGTGATCTCAACTTTGTGGACGATGAGGGTGACATGCTTCCACTGAGGACATATGGGATGTTTTCCGTTGACTTCAGAGATGATACGAACCAGGAAGTCCTAGGGGCTGGAGCGGTCCAAGTACTCCTAGACACGCAGCACGTCAAAATGCAAGAACATATTCCCAAAATGAAACTGTGGTCCCTCAACCCAGACACAGGTGtctgggaggaggagagtgacTTTCACTACACTCAGACCACATCTGGTGGTAATGGACGGCGCAAGCGAGAGGAGCGCACTTTCCTCATAGGTAATATGGAAATCAGGGAGCGTCGACTTTTCAACCTGGATGTGCCTGAGAACCGCCGCTGCTACGTCAAAGTGAGGACATACATGAGTGACAAATTCCTGGCCACTGAGCAGTTGGAAGGTGTGGTCATCAGCCTGATAAACTTGGAGCCCAAGCCTGGCTTTTCCTCTAACCCCAGAGCATGGGGTCGCTTTGACAGTGTGATAACTGGACACAACGGAGCCTGCCTGCCAGCCTTCTGTGATGCTCAGGTGCCTGATGCTTACACAGCTTATGTCACAGGCATTATGGGTGGTGAAGAACTGGAAGCAGCTCCCTCAACCCCCAAGATGAACCCAAACATCATTGGAGTGTCTCAGCCATATTTAGACAAGATAGACTACCAGCGTTCAGACCACAATGATCCAGCTCTTAAGAAAACAGCCTTCAGAATCAACTTGGCAAAACCCAACCCCAATAATTTGGAAGAGACCAACGGGCCAATATACCCCTACCAGAGTTTAATATCCTGTGAAAATGCAGAAGTCAATGCCAACCATTTCCGATTCTTCAGAGTGGAAAAGGACAAATATGAATATAACGTTGTGCCCTTTCAAGAGAACGACTTAACATCGTGGACAGGTGACTACCTCTCTTGGTGGCCCAACCCTCAAGAGTTCAGGGCTTGCTTCATCAAGGTCAAGATCCAGGGACAAAGGGAGGTTATGATAAGGTCACAGAACCATGGAGGCACCCACCCTGAGACTGCAGGCCAGCTGTACGGCATCAGAGACATCCGCAGTACCCGCGACATGCACgtggccaacatctcagcagcTTGCCTCGAGTTCAAGTGCAGTGGTATGCTCTTCGACCAAGCCGCAGTCGATAGGTCCCTCATATCAGTCCTCCCACAGGGCAACTGTCGGAGAGTGGGCATCAACAGCCTCTTAAAGGAGTATCTGACCAAGCACCCCCCTACCTCACCGAACAACGAGTCCCATGCCTTCAACATGCTGGCCCCAGTCGACCCCTTGGGGCACAACTATGGCATCTACACAGTCACGGACCAGAACCCAAGGGTGGCAAAAGAGATCGCCATTGGACGTTGTTTTGACGGTACCTCTGACGGCTTCTCCAGAGAGATGAAGTCAGACACTGGGGTTGCTCTGACCTTCAGCTGCCCAGAAAGGACTTTAACCAGGGAGAGTCTCTTTCAACGCCTCCAGACAAACCCCAGCCAGACCCTGTCTCAGATGGCAAGGGACATGAGGGAGGCGCAGGGGCTGCAGGTCCAAGGAAGGTCCTCCCGGGTAGTGACCTACCCCTCTGAATCCACGAGCCGCAGATCCAGCTCCTCTAGCAGGAGGAGATCCATGATGCGGACACAGAACCGGCAGTAGATCTGCCGTTAATAAGTCTTTTGGTTAGAAATGAAGATGACGTACTCTCACAAACAAAAGAAGAAAATGTCAAGTTGTGTCAGCCTGGTGATGTTGGATGTGAACTTTCTCTGAACACAGTACGGTAATCTATTGAAGCAGTAACTTCTCCAGCAAAACCACACAGGAGGGAGAAATTAAGACTTTTTTTTCTCTGAAACTTACTGGAAGGGTTTGGCAATACATATCAGTATTCATTGTATTCCTTGAGAAGAAATACATTTCTTTAGCTTTCATCAGTCCAGTAAAGCAAAGGATATTTATTTAATTGGCATTAATAGGATTTTAAGAAGGAAACCAATTTCCGAGGAATATTTGGATTTATCGCGTTCCACATTAAACATCGTTAACCAACCGTCTTTTCTGATATCTCTGATCGCTTGAGTTATAACCAACTGCAACTGTAAACGCCAGTCAAAATGCTAAACACTTCATAATCGACAACACTTTCCATTGCACTCATGAGTCCCTCAAGATCAAAGGAACATGAGGTCCTAGTGATCTAGTTTGTTTGTAACAGACAGTGGGCCCCTTTTCTAGAAACCGGGAAGTCTTTGCTGCCAAAAAGAGGCATTATTTAAGAAGATGCAATGGGGTGCAAGGAGTTATCGAGTTTGTGGAACAGAGGACGCTTCTTAGTGTGCTTGTTTCTAGCGCTTTTCTCTCCAAATAAGCATGTCACATTGCCAACTGAGATCCAGACCTTTTCTCTAACCTGAATCCAACATGTACCGGGCCCCAGCCAACACAAGCATCCCTTATCAAAATGCATCTCAACAGTTGACTGAACAGAGCCTGCGGTAggggacctgagagagagaggatattgtGGGGGATGGCACAAAGTCCCCAAGTACTCATCCAACACACCTCTCTGTCTGTTCTTCAACATCCCCCCCAACATTACTGTCAGGAAtgtaaaaaactaaaacaaatcaACATCAGAGAAGAAACCCTATTTATACATTGCAGATAATTAGCTAGGCTAGTTCCAAGACTAAATTGACTGTATTGTTGTTAAATGTGGGagtgtctgtctttgtctcatcAAGTGCAATAGCTATGTTCTATTTTGACCTGAGAGCCCTTGCAAATCATCACGTGACAAGTCAATGATATACTGCAACAGGTACTGCTGGTAAATAGGGTAAATCCTTCAGTAAGTTTGGCTATGGTATACCGAGTGTATTTGTAAGGGAGCTTGTACAGGATTCAATTGCTTTTTGAATTACAGTGTATAACAATCACTTAAAATGTTAGGTAATCATTTTACACTGTCACATATATTTCTGATATTCCTGCAATCTGCTCCCATTATAATGTTTTCATATCTTGCTGCATGTCGCATTAACTTTTAGCAAGAAGTGTACAATCATATTTTCAGTTTAGAGAACACAGTCCCTTTCCAGAGGGACACATTTATCTCAACGGTACTATTTCCCCATAGCTACTAAACAACAACTTATTATTAAAATAGTTAACTTGCAGACAGACTTCTGATTATTACAGGACCGATTCCACAAATTTGTTTCCCAAGGGGAAAATAGGCTCTGGGAGAATTAAGTTTTATTTAAACAGTCCTTCAGAAGAACCAATTATGAACATGCCATCTTTCTACCCATCACTGAGTATGAGTTATAGAGGTTCTCCAGTGCTTGAGCATTAGAGTGGCAAGTGGGAAGACATTCAAAGAGGCCCATTTAATTGGATTCAGTAATTGGAGGAAAGTTCCCCATTGATAGTAGGTCCAAACTTGTTTATCTATGTAGTGGGTGGCTGTGGGTCCCTTCAGACTGCTGGAGAGCTCCTACAGCTGAACTAATCCAAACCCAAATGAGTGCCTGTAGAACACGGAGGAAGCAAACATGGCTGGCTCGTAGTTATCAGCCCAGCTGTTAATTAGGaaatacattacatatacacttgGGGGTACTTTGAAGAGTTTAACCGAGACTGTCACAAACAACCAAACAAGTTGATTTCCAGACAGCATGTGGATATAATTTAGGCACAAGAGAGGTCTGTGGTCGAGTATGTTCAACATTTAAACGACCATACCTTTAAATTGGCTCAATTTTCGAGGTGTTTTCTTAAATGTCAGTCAGCAAAACCTCAGGGAACTAAGTAAATTGAAACCATTGCAGTTTATTGTACAGTTTATTGTACAAAAAAAAGGAGTTTAGATGTTGCACGCAACCTGAAACTAGCAACAGCCCAAAAAATATCTTATAAAATAGATACTCGGGATCAAATAGATTTAACAAGTATATTGTACAGTGCCTCTAGAAAGCGATATGTGGAAATGATCATTTATGGCCCTCTAGTCATTATCAATGACCTCTACCATCATGGGCATGTTAAACCCTCTTagaatggacagtccagcagttCATTAAAATAAACCAATCAGCTTATTTGGAGCAGATTGTTGCATCCAGGCTATGAGTAAGATGATGGTAATTGGGTCCACGTGTGGAAAAGATAACTCTCATTAACCACAGTAGGgtgtgaggtgagagagaggggccacAGCAACAACTGTTCAACAACTGGAGGACTTGCAACACCAAAGAGGAGTCACTTCTGGAGTCACTTGTGGGAGAAGGGTGAGATTATCTTGTGATGGATTTGAATAATTACAGAGAGCTGTTGTAGAGAAAAAGGGGGGAAAAGTGGTCTTTGGCCTCGCTGTCCATCACTTATCTGGAGCTGAAGTCGTCACTTCTGGAAGTAGGCTGTTTAAAGTAAACGTGTTCTGAGAAGTTGACTGGTAGATGTTTCATGAAGAGGCTTTGAGGGAGGTTGAGAGACAGAGTAAGTCTAATTGCCAATGTTACATAACACTTTGTGTGAGAAAAATAGTAAGGACTATCCGAACAGTCTCTGATCAGTTTCCAGTTTCCTGATTCATTAGCtttaagaggagagaggaatggaagagagtTTCCTATTCAAATGTAGAAACATGGCGATGTTGTGGAAAAAAAACCTCAAACAGAAAACAGATTGCAAAGATCTCCTTTTAATACAGAAGAAATAGTCAAATGACATGATCCCCTCGATTCCAGACACAGTTTCAGGTTCTAAAAATTCCCAGACAGGTTCGTGCTTCACATTTCACATAATAAGTGATAAATGACAATTTTAAAAAAATTCACCTAGTTTTCGCTACTTCTCCATGGTAGTTCAGCAGTCTCGTATTCCCACTTGTCCTGTAGAATGTTGAGGTACCAGTGCTTGTAGACTGACGGACACTATACAGCCCAGCCTTGGCTTCAGGTTGATTTCTGAGTGTGCCTATGCCACCAGCATGACTGCATGCATCTGTCCTCTCCTGTACAGTCTGGCTGCTCTCAGGGAGACTGTAACTTATTCAGGAATATCCTCTGGCGAAGCGAGCATTGGATCTTTCCATATTGTCTGACCTATTAAGAGAGACTTGTATGGTTGCCACTGTGCTCTGGAAGATGTCTTGGTGACCCATAAACTTATTACATAAATCAATTTCTGAGAATTCTCTGTTTAATCATTACATGACATGTACTGCATGGCGTTGCCCatttgtctttctttttcatgtGTAAATTGTGTATTGTATGGAATTTACTAAATGTATAAGGAATTGTAAATAAACCTTTGCTGTAAAATTT

Function

NR:

description
cartilage intermediate layer protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587735.2 True 7920 mRNA 0.47 10 21271127 21303061

Neighbor

gene id symbol gene type direction distance location
LOC110507530 LOC106573595 coding upstream 3473 21194656 ~ 21267654 (+)
LOC110507450 LOC106573594 coding upstream 79946 21148112 ~ 21191181 (+)
LOC110507137 LOC106573592 coding upstream 129276 21134277 ~ 21141851 (+)
LOC118945307 NA coding upstream 184918 21003934 ~ 21089252 (+)
mef2b mef2b coding upstream 287814 20950107 ~ 20983313 (+)
LOC110512702 LOC106573599 coding downstream 50241 21353302 ~ 21355858 (+)
LOC110507802 LOC106573603 coding downstream 301963 21605024 ~ 21631294 (+)
LOC110508215 LOC106573607 coding downstream 430533 21733594 ~ 21747189 (+)
LOC110508358 LOC106573608 coding downstream 476680 21779741 ~ 21785244 (+)
LOC110508526 bsg coding downstream 489395 21792456 ~ 21802903 (+)
G19851 NA non-coding upstream 148094 21122675 ~ 21123033 (+)
G19850 NA non-coding upstream 154763 21116095 ~ 21116364 (+)
G19848 NA non-coding upstream 176198 21094332 ~ 21094929 (+)
G19846 NA non-coding upstream 190568 21075440 ~ 21080559 (+)
G19845 NA non-coding upstream 191158 21075092 ~ 21079969 (+)
G19935 NA non-coding downstream 2062 21305123 ~ 21305391 (+)
G20564 NA non-coding downstream 14684 21317745 ~ 21317969 (+)
G20589 NA non-coding downstream 54677 21357738 ~ 21361968 (+)
G20590 NA non-coding downstream 62159 21365220 ~ 21367027 (+)
G20591 NA non-coding downstream 66004 21369065 ~ 21369398 (+)
G19400 NA other upstream 961229 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 994232 20276590 ~ 20276895 (+)
G19359 NA other upstream 1028252 20242645 ~ 20242875 (+)
G19083 NA other upstream 1355295 19915586 ~ 19915832 (+)
LOC110503939 LOC106573564 other upstream 1405522 19863734 ~ 19865619 (+)
G20773 NA other downstream 264484 21567545 ~ 21568188 (+)
G23109 NA other downstream 2235335 23538396 ~ 23538863 (+)
G23135 NA other downstream 2271531 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2569960 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 3201594 24504638 ~ 24506125 (+)

Expression


Co-expression Network