G20589


Basic Information

Item Value
gene id G20589
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21357738 ~ 21361968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU24017
ATTTGTAAAGGTTTTTTATTTAGGAAAAATACAACCACGAAGATACAGaatgcttaaaaaaaaaatcaaatacaaaACCAATCTGATGCTATGACGAGAACAGTTGTGAAATCACTCCATTTGTACCCTCATAAAAAGTAAGTTTGTTGAAAAGAGCTCATAAGTAGTAGTTACCTTTAAGAACTGGCCCGCTTCACATTAATTCACCGCTGTGTACTCAACTGTCATGTGACAGTTCCTTATTCAAAATGTGCagctaataaaataaaaaacgttCTCAGTAGAAACCAAAATAAATTAGACAGGAACCTGCCATAGGTCAGTCAAACAGATCAGTGATCCAGAAAACAATTGAGTAGGCCCTCTTCATTTACCAGAACTTACAGCGATCCTAAAAAGCCCAGTGGACTAGAGAACgtctccaccatccctccctctgtcaggTAGAACAGTGCAAACATGGTGATGGAAGGTTTCAGACATTTGTGTACATTTCCCTCATTCAGACTCATCACTATTAATGGGTGGCAAAGCAGTCACAATCAAATCAACCAAAATAAGTGCAAGCATTTTCATACTTCGTTACAGAGCAGAGCTTAAACTACAACAGCATTACCATTCTCTATCCAAGATACATTCCCTGTCTTTCAGGTTGTGCACAGCCCAAAGTGAGGCAAAGGCCTACCGCACATGAGCCTTGCTCTTTCGAGCTCCCCACAAAAACTGTAAATTAAAATTTCGTTCTCTGCGGTTTTCAATAACAAATAAGGAGGATCAGAAAGTAAAAAACAAAAACTTGGAACAGACCGGTGGTGGGTGGCTCGGAGTGCAAGCCAGCCCTCCCCGCACTTATCCAGGACTGCTCTTATCTACATGGTGGGTTTCAGAAGAAGATTTAAAGTGTCGCGGAGCAGCAGGCGCTGGGCTAGGACCAGGCCAGGCCCGCCGTCATCGAGATGGGGCCCCCGGTTCGGGGTGAGGGGCCGTGCCCAGACGACAGGCATCCGGACGCCACTGTCCTACCAGCCACCCTCGTCACCTCCTGAACGATCTCCATATCCTCCTCCTTGTGCTCTGTCTTTGTTGTAGTAGCCTCTTTCTGATCCGTATGAGCCTCCACTTCTGTTGTCGTAACGTCCACCACCATATCCCCGGTCTCCaccacCTCGTGAGAAGCCACGCCCACctcttccaccaccaccacctctgccTCCACGGAAgtatcctcctccacctcctctgccACCTGAAGAGCCCCCTCGGAATCCGCCTCCGGACCTGCCACCACCGCCAGATTTGCCCGCCTGGTCGACACGGATCTGTCTGCCATCAAGAGACTGACACAGAAAGGGTTGGGGATATAAAGAATACACCATTAATATCGTCGTTGCAGTCAAGACAGAGTTGTGTTTCAGGGCGGAGTTGAGGTTTAATTGTTACCTTGCCATTCATGGCCAGCATAGCATCCTTGGCCTCATCTGGGTTCTCGAAGGTGACGAAACCAAAGCCCCTGGACCTCTGAGTTTCTCTGTCTTTAATTACAACAACTAGACAGAGAAATTGTATTTAAAGACTATAGACACACATGGCAACCTTGCAAGACGTGTATCATTCAAAGCATGTTCAAATAGTGGACCaccagatatatatatttttttacattgctcCCAATATCCAACAGTTAGTCGCTTACCTTCAGATATTTGCCCATATTTGGAGAATACATCTTCTAATGACTGTTCGTTAGTGTCAAAGCTGAGGCCACCCACAAAAAGCTTCCCTTCGTCAGACATCCTTCCTTTTCACCACTGCAGAAGGGAAGAAATAACATGTTTATTATGGATGCAATGATTTATTTGCAATGAACTGTTAGCAGCAGGGCTGGAATTCGTTGGTGGATGGGCCAACGGGGGAGTtctgagtatatatatatatatatatatatatatgtattttttttttatagctaaATCTGATTAGGTGGGCCTGGCAGTGCCTACGCCACTGGATAGGAGGTTATTATTGGATGAAAACCTCTGTTCTATTCTTGCAATGGTGCACTTACACACGCAATAACAAAATTATTTTTAAGTTGTTTGGCTTGATTCTGATTTGTATTTTTACCCAATGCCAAGTATGTTGTATTACCAACATGAAGGTAACCTAGCAAGTTTGATAAAAACCAGTCAAGTGCCAGCGAGTGAAGAACAA
>TU24018
ATTTGTAAAGGTTTTTTATTTAGGAAAAATACAACCACGAAGATACAGaatgcttaaaaaaaaaatcaaatacaaaACCAATCTGATGCTATGACGAGAACAGTTGTGAAATCACTCCATTTGTACCCTCATAAAAAGTAAGTTTGTTGAAAAGAGCTCATAAGTAGTAGTTACCTTTAAGAACTGGCCCGCTTCACATTAATTCACCGCTGTGTACTCAACTGTCATGTGACAGTTCCTTATTCAAAATGTGCagctaataaaataaaaaacgttCTCAGTAGAAACCAAAATAAATTAGACAGGAACCTGCCATAGGTCAGTCAAACAGATCAGTGATCCAGAAAACAATTGAGTAGGCCCTCTTCATTTACCAGAACTTACAGCGATCCTAAAAAGCCCAGTGGACTAGAGAACgtctccaccatccctccctctgtcaggTAGAACAGTGCAAACATGGTGATGGAAGGTTTCAGACATTTGTGTACATTTCCCTCATTCAGACTCATCACTATTAATGGGTGGCAAAGCAGTCACAATCAAATCAACCAAAATAAGTGCAAGCATTTTCATACTTCGTTACAGAGCAGAGCTTAAACTACAACAGCATTACCATTCTCTATCCAAGATACATTCCCTGTCTTTCAGGTTGTGCACAGCCCAAAGTGAGGCAAAGGCCTACCGCACATGAGCCTTGCTCTTTCGAGCTCCCCACAAAAACTGTAAATTAAAATTTCGTTCTCTGCGGTTTTCAATAACAAATAAGGAGGATCAGAAAGTAAAAAACAAAAACTTGGAACAGACCGGTCTTTGTTGTAGTAGCCTCTTTCTGATCCGTATGAGCCTCCACTTCTGTTGTCGTAACGTCCACCACCATATCCCCGGTCTCCaccacctgtaatataacttgTGGTTAACAGCTGAATCAAAGGAATGCTAAAAGCAGCCATGCACTCATCTTATGGTTAAATGTGTTAAGAGAATATCAAACACCACTCTTCAGTTTGGACATGCTATCAGTAGCCCAACAGATGTCTCAATCAAACCTCTACAGctactagacaacagcaacagtCACTGCAAAACAAAAAGACATGGGAACATAGGAGTGGTTATTAAGGATGAgggatcgggggggggggggggggtcagagtgCGGGGTGCACACATATGCACTGACTACTTCTGGTTAGTTCTGCAAGCCACAGAATCCCAGGCTAGCGCAGGTGTGAGGACATCTTTGTAGGGTTGGGACTGGGGTGTCAGTCACTCCAAGGCAAACGAGGGAGGGACACTCAAGGTCAGGGTGCTGTAGGATAGAAAACAACAAACTTGCCTCGTGAGAAGCCACGCCCACctcttccaccaccaccacctctgccTCCACGGAAgtatcctcctccacctcctctgccACCTGAAGAGCCCCCTCGGAATCCGCCTCCGGACCTGCCACCACCGCCAGATTTGCCCGCCTGGTCGACACGGATCTGTCTGCCATCAAGAGACTGACACAGAAAGGGTTGGGGATCTTGCCATTCATGGCCAGCATAGCATCCTTGGCCTCATCTGGGTTCTCGAAGGTGACGAAACCAAAGCCCCTGGACCTCTGAGTTTCTCTGTCTTTAATTACAACAACTAGACAGAGAAATTGTATTTAAAGACTATAGACACACATGGCAACCTTGCAAGACGTGTATCATTCAAAGCATGTTCAAATAGTGGACCaccagatatatatatttttttacattgctcCCAATATCCAACAGTTAGTCGCTTACCTTCAGATATTTGCCCATATTTGGAGAATACATCTTCTAATGACTGTTCGTTAGTGTCAAAGCTGAGGCCACCCACAAAAAGCTTCCCTTCGTCAGACATCCTTCCTTTTCACCACTGCAGAAGGGAAGAAATAACATGTTTATTATGGATGCAATGATTTATTTGCAATGAACTGTTAGCAGCAGGGCTGGAATTCGTTGGTGGATGGGCCAACGGGGGAGTtctgagtatatatatatatatatatatatatatgtattttttttttatagctaaATCTGATTAGGTGGGCCTGGCAGTGCCTACGCCACTGGATAGGAGGTTATTATTGGATGAAAACCTCTGTTCTATTCTTGCAATGGTGCACTTACACACGCAATAACAAAATTATTTTTAAGTTGTTTGGCTTGATTCTGATTTGTATTTTTACCCAATGCCAAGTATGTTGTATTACCAACATGAAGGTAACCTAGCAAGTTTGATAAAAACCAGTCAAGTGCCAGCGAGTGAAGAACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24017 False 2211 lncRNA 0.39 4 21357738 21361968
TU24018 True 2305 lncRNA 0.43 3 21357738 21361968

Neighbor

gene id symbol gene type direction distance location
LOC110512702 LOC106573599 coding upstream 1880 21353302 ~ 21355858 (+)
LOC110507602 LOC106573596 coding upstream 54677 21271127 ~ 21303061 (+)
LOC110507530 LOC106573595 coding upstream 90084 21194656 ~ 21267654 (+)
LOC110507450 LOC106573594 coding upstream 166557 21148112 ~ 21191181 (+)
LOC110507137 LOC106573592 coding upstream 215887 21134277 ~ 21141851 (+)
LOC110507802 LOC106573603 coding downstream 243056 21605024 ~ 21631294 (+)
LOC110508215 LOC106573607 coding downstream 371626 21733594 ~ 21747189 (+)
LOC110508358 LOC106573608 coding downstream 417773 21779741 ~ 21785244 (+)
LOC110508526 bsg coding downstream 430488 21792456 ~ 21802903 (+)
LOC110508592 LOC106613751 coding downstream 447596 21809564 ~ 21911516 (+)
G20564 NA non-coding upstream 39769 21317745 ~ 21317969 (+)
G19935 NA non-coding upstream 52347 21305123 ~ 21305391 (+)
G19851 NA non-coding upstream 234705 21122675 ~ 21123033 (+)
G19850 NA non-coding upstream 241374 21116095 ~ 21116364 (+)
G19848 NA non-coding upstream 262809 21094332 ~ 21094929 (+)
G20590 NA non-coding downstream 3252 21365220 ~ 21367027 (+)
G20591 NA non-coding downstream 7097 21369065 ~ 21369398 (+)
G20595 NA non-coding downstream 10356 21372324 ~ 21372556 (+)
G20616 NA non-coding downstream 42518 21404486 ~ 21404842 (+)
G20618 NA non-coding downstream 45969 21407937 ~ 21408139 (+)
G19400 NA other upstream 1047840 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1080843 20276590 ~ 20276895 (+)
G19359 NA other upstream 1114863 20242645 ~ 20242875 (+)
G19083 NA other upstream 1441906 19915586 ~ 19915832 (+)
LOC110503939 LOC106573564 other upstream 1492133 19863734 ~ 19865619 (+)
G20773 NA other downstream 205577 21567545 ~ 21568188 (+)
G23109 NA other downstream 2176428 23538396 ~ 23538863 (+)
G23135 NA other downstream 2212624 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2511053 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 3142687 24504638 ~ 24506125 (+)

Expression


Co-expression Network