LOC110507530 (LOC106573595)


Basic Information

Item Value
gene id LOC110507530
gene name LOC106573595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21194656 ~ 21267654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587613.2
CAGAGAAGGGCTGCTGATACAAACATGAGAGAGAGCGTTCTGAGTGGGAaatagcagacagagagagaacaagagtgtATTCTGTAAAGCAGTGCAGCTCATTCTACCCTCCTCCTGCGTATGTACTGAATCCTCCCAGGCTGCCAAAAGATGAACCACAGCTCGACTGAACCGGCGGAGACCATCGAGCTACTGCGGTATCTCAGTAAAGTGGAGACAGCAGCCATTGAGACAGAGCTGCTGAGGGACTACAGGTTTGGCCAGCAGCAGCTGATAGAGATCTGGGGGCATGCCTGTGCCATCGCCATCACCAAGgccTTTCCTCTGACCTCCCTGGGTAAGAAGCAGCCAACAGTGTTGGTAGTCTGTGGTCCTGACCAGAACGGCTCCATCGGCCTGGTGTGTGCCCGCCACTTGCGCATATTTgagTATGAGCCAACCATCTACTATCCCAAACGTACCCCTCACACCATTCAACAGGACTTCACAGTTCAGTGTGAAAAGATGGACATCCCATTCCTCTCCTATCTCCCAACAGAGGTGCAGTTGATCAACGATGCCTATAACCTGGTGATCGATGCCATCCTGGGGCCAGAGACTGACCACACAGACGTGAAGGAGCCCTACGCTGGCATCCTAGTCACTCTGAAGCAGGTCAAGATCCCCATCGTAAGTTTGGACATACCCTCAGGTTGGGATGTTGACCAGGTGACCTCAGATGGGATCAACCCAGACGTCCTGATCTCGCTTATGGCACCAAAGAGATGTGCCACCAGTTTCACAGGGAAGCACTACTTGGCGGGACGCTTCCTGCCTTATGACATCCAGAAGAAATACGATCTGAACCTGCCAGAATATCCAGGCATAGACTGTGTTATAGAATTGTAAAATATTCTGTACACCCTCACCAGTCCTCATTTTGGATAAATATGGATAATATATTCACGTTTTGTATTTTATAGATTGTTACTGTGCTTTACCGTTCATGTGCTATCTCTCCAATGGGTGTAGACTAGAGCAGGTTTAGCCTTACCCAGAATTCACTCTGTTTGCTCAAATACAATAGAAAAATGGTATAGAATCTGTGGGAGGTCTGAGTTGTATGTCTGTTTTGGAAATGGTTTGAGGAGTTTCCATGTCAGTTTTCATGTGAGTTACCAAGTGAGTTGCGTCATTCTCATTTTTGTGATTGCTTCTTTGCAACGTTCTGAGATGATCTTTCTCCTTCAGCAAAAAAATGATGAATGTTGTGCGGAAGAGGTGTTTTGTACCTTCGAGTTAACTGCTTTTTGTTATGTATTATTATGTTTTGAGTTCTGTTTTTCTTATTGAAGAATGCTTGGATTTTGGGTCATACTACTTTCTAGCAgctgcatattttttttttatagaattCAGTCTACACTGCTGCATTTCCTTAGTCCAAGTAACACCTGTTCGTTGCTTTGCAGTTACAGAGTTAACTCTTTGTCCAATAAAATATCTCATTTAACAATT

Function

NR:

description
yjeF N-terminal domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587613.2 True 1497 mRNA 0.45 6 21194656 21267654

Neighbor

gene id symbol gene type direction distance location
LOC110507450 LOC106573594 coding upstream 3475 21148112 ~ 21191181 (+)
LOC110507137 LOC106573592 coding upstream 52805 21134277 ~ 21141851 (+)
LOC118945307 NA coding upstream 108447 21003934 ~ 21089252 (+)
mef2b mef2b coding upstream 211343 20950107 ~ 20983313 (+)
borcs8 borcs8 coding upstream 263319 20922980 ~ 20931337 (+)
LOC110507602 LOC106573596 coding downstream 3473 21271127 ~ 21303061 (+)
LOC110512702 LOC106573599 coding downstream 85648 21353302 ~ 21355858 (+)
LOC110507802 LOC106573603 coding downstream 337370 21605024 ~ 21631294 (+)
LOC110508215 LOC106573607 coding downstream 465940 21733594 ~ 21747189 (+)
LOC110508358 LOC106573608 coding downstream 512087 21779741 ~ 21785244 (+)
G19851 NA non-coding upstream 71623 21122675 ~ 21123033 (+)
G19850 NA non-coding upstream 78292 21116095 ~ 21116364 (+)
G19848 NA non-coding upstream 99727 21094332 ~ 21094929 (+)
G19846 NA non-coding upstream 114097 21075440 ~ 21080559 (+)
G19845 NA non-coding upstream 114687 21075092 ~ 21079969 (+)
G19935 NA non-coding downstream 37469 21305123 ~ 21305391 (+)
G20564 NA non-coding downstream 50091 21317745 ~ 21317969 (+)
G20589 NA non-coding downstream 90084 21357738 ~ 21361968 (+)
G20590 NA non-coding downstream 97566 21365220 ~ 21367027 (+)
G20591 NA non-coding downstream 101411 21369065 ~ 21369398 (+)
G19400 NA other upstream 884758 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 917761 20276590 ~ 20276895 (+)
G19359 NA other upstream 951781 20242645 ~ 20242875 (+)
G19083 NA other upstream 1278824 19915586 ~ 19915832 (+)
LOC110503939 LOC106573564 other upstream 1329051 19863734 ~ 19865619 (+)
G20773 NA other downstream 299891 21567545 ~ 21568188 (+)
G23109 NA other downstream 2270742 23538396 ~ 23538863 (+)
G23135 NA other downstream 2306938 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2605367 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 3237001 24504638 ~ 24506125 (+)

Expression


Co-expression Network