LOC110503939 (LOC106573564)


Basic Information

Item Value
gene id LOC110503939
gene name LOC106573564
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19863734 ~ 19865619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582641.2
CTCCCATGTCGGAAACACAATTACAGGAAGTCACGTGATCGAATTATCTTGTTTCAAGGGCAACTTGTCGAAGTGGTTGCAAGAGCTGCACGTGTAGTTAGGTAGCTACAGTTTAATTTCTTAAAGTTTTAATATTAGCTATCACAATTAGTTATGGACGGATTTGGTTCCGACTTTTCATCAGGTGCTGGGTCCGGTAAAATGGACACCGGGACAATCATGGAGCAAGTGAAGGTCCAGATTGCGGTGGCTAATGCGCAAGAGCTCTTGCAGAGGATGACAGACAAATGCTTCAAGAAATGCATAGGCAAACCAGGAGGCACGTTGGATAACTCTGAACAGAAATGCATCGCTATGTGCATGGATCGATATATGGATGCATGGAATACTGTGTCCCGTGCCTACAATtccagactacagagggaaagGGCTCGTATATGAACATTATCCTACTCTGTCAGCCCTACCTCAGCAAAGCCCAAACATATGGCAGGGAAGGTGTTAACGGTAGTTGCTGAGGCTGGCACGATGCCACACAAACTTCTGTGACAACACCTCACGGACAGGTTTGGTTTGTCGACCTTGTGAACAGCAGCCATATTTGTGGACATTCTCCTTTCACTAAAGGATAGTTTAACAAATGGATATCTTCtataatgtttattttttattacaagAGTCATGAATTCATTTTCATGAAAAAAGACTTTCTGTAATTATGTCACTTTTCAATCACCCTCTAAACTAGTCTACTCTCTGTAACCGTCCCCTTATATTCAGTGCCAGGTACCCAATTCTTCAGTTTGTCACAGGCTATggctatgtgtttgtgtgggtgaaACAGTTCCCTGAAGAGGTTAGGTAAGGTTTATTTTACCACCACTTTCATCTGTAAACCTAGTTTCTCTCATGGGGAAGAATTGAGGAACAAGTTtttgttttcataactgtgaaccCGGCCAAGCCAAAGAATCCTATATCAGAATACGTGTTGAGAACAAAACAGTATTGTCAAGACTTTGGTTCCAGTTGTCACTCTATCTGCCCACCACAGTAGTGGGTCTGTTTTAACAAGGTCTGCTGTGGTGCAGACTTTGTGTTGAACCCAGCTGGCTTTGTGTGCTTGGTTTGTCAGATTTCTGGGAACAGCTCCACTTCATTCAGCCCTTTGACTTGTGTAGAGAAGTAAAAAGAAATGGCCTGTGAATGCTGAACGGTGGGTGCTGCTCAGTTTGTGACTGACTGGAATGGCCTTTTTCACTTGTCAGAAATAAATAAATCCAGATTAAATTGTCAAA
>XR_005039975.1
AACACAATTACAGGAAGTCACGTGATCGAATTATCTTGTTTCAAGGGCAACTTGTCGAAGTGGTTGCAAGAGCTGCACGTGTAGTTAGGTAGCTACAGTTTAATTTCTTAAAGTTTTAATATTAGCTATCACAATTAGTTATGGACGGATTTGGTTCCGACTTTTCATCAGGTGCTGGGTCCGGTAAAATGGACACCGGGACAATCATGGAGCAAGTGAAGGTCCAGATTGCGGTGGCTAATGCGCAAGAGCTCTTGCAGAGGATGACAGACAAATGCTTCAAGAAATGCATAGGCAAACCAGGAGGCACGTTGGATAACTCTGAACAGAAATGCATCGCTATGTGCATGGATCGATATATGGATGCATGGAATACTGTGTCCCGTGCCTACAATtccagactacagagggaaagGGCTCGTATATGAACATTATCCTACTCTGTCAGCCCTACCTCAGCAAAGCCCAAACATATGGCAGGGAAGGTGTTAACGGTAGTTGCTGAGGCTGGCACGATGCCACACAAACTTCTGTGACAACACCTCACGGACAGGTTTGGTTTGTCGACCTTGTGAACAGCAGCCATATTTGTGGACATTCTCCTTTCACTAAAGGATAGTTTAACAAATGGATATCTTCtataatgtttattttttattacaagAGTCATGAATTCATTTTCATGAAAAAAgtgtttgtgtgggtgaaACAGTTCCCTGAAGAGGTTAGGTAAGGTTTATTTTACCACCACTTTCATCTGTAAACCTAGTTTCTCTCATGGGGAAGAATTGAGGAACAAGTTtttgttttcataactgtgaaccCGGCCAAGCCAAAGAATCCTATATCAGAATACGTGTTGAGAACAAAACAGTATTGTCAAGACTTTGGTTCCAGTTGTCACTCTATCTGCCCACCACAGTAGTGGGTCTGTTTTAACAAGGTCTGCTGTGGTGCAGACTTTGTGTTGAACCCAGCTGGCTTTGTGTGCTTGGTTTGTCAGATTTCTGGGAACAGCTCCACTTCATTCAGCCCTTTGACTTGTGTAGAGAAGTAAAAAGAAATGGCCTGTGAATGCTGAACGGTGGGTGCTGCTCAGTTTGTGACTGACTGGAATGGCCTTTTTCACTTGTCAGAAATAAATAAATCCAGATTAAATTGTCAAA
>TU22177
GGGCAACTTGTCGAAGTGGTTGCAAGAGCTGCACGTGTAGTTAGGTAGCTACAGTTTAATTTCTTAAAGTTTTAATATTAGCTATCACAATTAGTTATGGACGGATTTGGTTCCGACTTTTCATCAGGTGCTGGGTCCGGTAAAATGGACACCGGGACAATCATGGAGCAAGTGAAGGTCCAGATTGCGGTGGCTAATGCGCAAGAGCTCTTGCAGAGGATGACAGACAAATGCTTCAAGAAATGCATAGGCAAACCAGGAGGCACGTTGGATAACTCTGAACAGAAATGCATCGCTATGTGCATGGATCGATATATGGATGCATGGAATACTGTGTCCCGTGCCTACAATtccagactacagagggaaagGGCTCGTATATGAACATTATCCTACTCTGTCAGCCCTACCTCAGCAAAGCCCAAACATATGGCAGGGAAGGTGTTAACGGTAGTTGCTGAGGCTGGCACGATGCCACACAAACTTCTGTGACAACACCTCACGGACAGGTTTGGTTTGTCGACCTTGTGAACAGCAGCCATATTTGTGGACATTCTCCTTTCACTAAAGGATAGTTTAACAAATGGATATCTTCtataatgtttattttttattacaagAGTCATGAATTCATTTTCATGAAAAAAGACTTTCTGTAATTATGTCACTTTTCAATCACCCTCTAAACTAGTCTACTCTCTGTAACCGTCCCCTTATATTCAGTGCCAGGTACCCAATTCTTCAGTTTGTCACAGGCTATggctatgtgtttgtgtgggtgaaACAGTTCCCTGAAGAGGTTAGGTAAGGTTTATTTTACCACCACTTTCATCTGTAAACCTAGTTTCTCTCATGGGGAAGAATTGAGGAACAAGTTtttgttttcataactgtgaaccCGGCCAAGCCAAAGAATCCTATATCAGAATACGTGTTGAGAACAAAACAGTATTGTCAAGACTTTGGTTCCAGTTGTCACTCTATCTGCCCACCACAGTAGTGGGTCTGTTTTAACAAGGTCTGCTGTGGTGCAGACTTTGTGTTGAACCCAGCTGGCTTTGTGTGCTTGGTTTGTCAGATTTCTGGGAACAGCTCCACTTCATTCAGCCCTTTGACTTGTGTAGAGAAGTAAAAAGAAATGGCCTGTGAATGCTGAACGGTGGGTGCTGCTCAGTTTGTGACTGACTGGAATGGCCTTTTTCACTTGTCAGAAATAAATAAATCCAG

Function

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582641.2 False 1298 mRNA 0.43 3 19863734 19865619
XR_005039975.1 False 1166 mRNA 0.42 4 19863747 19865619
TU22177 True 1227 TUCP 0.43 3 19863791 19865605

Neighbor

gene id symbol gene type direction distance location
LOC110503761 NA coding upstream 8696 19850483 ~ 19855038 (+)
LOC118944655 NA coding upstream 15742 19844412 ~ 19847992 (+)
LOC110503571 LOC106573562 coding upstream 23019 19839020 ~ 19840715 (+)
LOC110503136 LOC106573555 coding upstream 202449 19641892 ~ 19661285 (+)
LOC110503198 LOC106573556 coding upstream 221846 19636713 ~ 19641888 (+)
LOC110504002 LOC106573565 coding downstream 36061 19901680 ~ 19906211 (+)
LOC110532018 LOC106573567 coding downstream 112225 19977844 ~ 20093947 (+)
LOC110505394 LOC106573573 coding downstream 331468 20197087 ~ 20200566 (+)
LOC110506010 polr2e coding downstream 453129 20318748 ~ 20321068 (+)
LOC110532051 NA coding downstream 642486 20508105 ~ 20522381 (+)
G19041 NA non-coding upstream 5016 19858151 ~ 19858718 (+)
G19023 nduab non-coding upstream 24937 19836538 ~ 19838797 (+)
G19020 NA non-coding upstream 30823 19832691 ~ 19832911 (+)
G19013 NA non-coding upstream 35317 19828093 ~ 19828417 (+)
G18621 NA non-coding upstream 43573 19819899 ~ 19820161 (+)
G19050 tmprss9 non-coding downstream 1445 19867064 ~ 19867364 (+)
G19051 NA non-coding downstream 2951 19868570 ~ 19868771 (+)
G19052 NA non-coding downstream 3280 19868899 ~ 19869163 (+)
G19054 NA non-coding downstream 4823 19870442 ~ 19870786 (+)
G19060 tmprss9 non-coding downstream 17867 19883486 ~ 19883863 (+)
LOC110502506 LOC106573550 other upstream 288706 19568684 ~ 19575028 (+)
G18481 NA other upstream 298513 19564849 ~ 19565221 (+)
G17420 NA other upstream 907526 18882723 ~ 18956208 (+)
ccdc124 cc124 other upstream 1872558 17975918 ~ 17991176 (+)
LOC110495874 LOC106573877 other upstream 2198726 17654164 ~ 17673094 (+)
G19083 NA other downstream 49967 19915586 ~ 19915832 (+)
G19359 NA other downstream 377026 20242645 ~ 20242875 (+)
G19380 LOC100194703 other downstream 410971 20276590 ~ 20276895 (+)
G19400 NA other downstream 443806 20309425 ~ 20309898 (+)
G20773 NA other downstream 1701926 21567545 ~ 21568188 (+)

Expression


Co-expression Network