LOC110503136 (LOC106573555)


Basic Information

Item Value
gene id LOC110503136
gene name LOC106573555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19641892 ~ 19661285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581489.2
AGATTAGTGTGATGTTTCATTATGCTTAAACGTATTTTATGATGGACTACAGAGCACAGCACAAAATTGGCGGTGGGGACTATTTCTGTTTTGTTGCACAAACGAGTAAAAATGACTCCCCCTAGAGGTAGTAACATTTATTTGTCCAGCCATAACGCGCATGTCTACCGCTGAGTGTTGTGGGTGTCAGTAAGGAAGTAAAATGGCGGACCTGGCAAACGAAGAGAAGCATGCCATAGCCCCACCAGTGTTTGTGTTCCAGAAAGATACAGCTCAGAAGAGATCAGTAGAAGGGTCTAGTGCGGAGGATGGAGAAGACTCTGATAAAGATGAGAGTAGTTACTGTCCCCCGGCCAAGAGGGAAAGGACATCGTCACTAACACAGTTCCCACCCGCACATTCAGTTTCTAAGAACAATGTGTTCATGCCATCCAGTTTCTGTCAGTCCCCGACAGGAAATAATAATTCAGATTCAGAACCTGaggagaaaacagttGGGTTTCGCCTGAAGCCTCCCACCCTGATCCATGGACAGGCTCCTAGTGCAGGTGTCCCGAGCCAGAAACCCAAGGAACTGCAGCGCAGTGTACTACGACCAGCAGTACTGCAGGCCCCTCTGGCCACCAAATCACTAACCCAAACCGGGTTGAACAGTGGTACAAATGGAGTGGACAGGTCATCAGAGGGTCTACCAGTTACCCAGAACAACACAGAGAAGTGTGATGACACGACCACGTCACAGGTTGAGCAGAGcagtgaacagaaaggctctacATCAGCAGAATCAGGGGAAACCAATTATTTCCTACAATACAGAAGCACTCCCAGCTTACAGAAGGCTGAGAACAAGGCTGATGACGGGGATAAGTTTGTGTTTGGACAGAACATGTCGGATCGTGTCCTGAGTCCGTTGAAATGTGAACAAGCAGCCGAGGGCAGCGGAGATCCCCCCACCGCCCCGCCCTGTGAGCTCCCGTCAAAAGACAGCAGCCCTGATAAAGATAACAATGTGACAGGGTCTTTGGAGGAGTCGGCGGCGGCCTACACCAAAGCCACAGCCAAGAGGTGTTTGTTAGAGAAAGTAGAGGTCAGAACTGGAGAGGAGTCGGAGAGTAACGTTCTTCAGGTCCAGTGCAAGTTATTTGTGTTTGACAAAGCCTCCCAGTCTTGGGTTGAGAGAGGCAGAGGACTGCTAAGGCTCAATGATATGGCTTCCACAGAGGAGGGATCGTTACAGTCCAGGCTGGTGATGAGGACCCAGGGCAGTTTGcgtctgatcctcaacaccaaACTGTGGCCTCAAATGCAGACGGACAAGGCCAGCGAGAAGAGTGTCCGCATCACAGCCATGGACACTGAGGACCAGGGGGTCAAGGTCTTCCTCATATCGGCAAGCTCTAAGGACACAGGGCAGCTGTATGCAGCGCTGCACCATCGTATTCTGGCCCTGCGGAGCCGCTCAGACCAAGAGCCAGAGCCCAGGGTCCCCATCCCAGATGGCCACATCCCTCATCCTCAGTCTAACGGGGAGGATAGTGATGAGGACGAACCGCTCACACCCACTGCCAACACTacagaggGTCCAGAGGCCCAGTCCTGCGGGACTGGCAGTGGGAGTGGGTCTTCATAGCACCTGCCCCCCTTCATCGGCTCACGCACTGCAGTCAGGACCACCTTACAGACCCCTCCATGGACACCTCAGGCCAGCATCTCCCCAGTGGTCTGAGGTCACAGTGGAGTGCCAGGAAGGATCCTATGCTGGTGTTACTAAGTTAACTCTGCAGTTCACACTCTGGATTCACAGTTTATCTGGGATGGATGGTCTTTTTTGTTTAGTatttgtcttctttttttttttttacctctagaACTGGATTTtgg
>XM_036964016.1
AGATTAGTGTGATGTTTCATTATGCTTAAACGTATTTTATGATGGACTACAGAGCACAGCACAAAATTGGCGGTGGGGACTATTTCTGTTTTGTTGCACAAACGAGTAAAAATGACTCCCCCTAGAGGTAGTAACATTTATTTGTCCAGCCATAACGCGCATGTCTACCGCTGAGTGTTGTGGGTGTCAGTAAGGAAGTAAAATGGCGGACCTGGCAAACGAAGAGAAGCATGCCATAGCCCCACCAGTGTTTGTGTTCCAGAAAGATACAGCTCAGAAGAGATCAGTAGAAGGGTCTAGTGCGGAGGATGGAGAAGGTAAGGATGAGGAGGGTAACCAAGCAAGTTCTGACTCTGATAAAGATGAGAGTAGTTACTGTCCCCCGGCCAAGAGGGAAAGGACATCGTCACTAACACAGTTCCCACCCGCACATTCAGTTTCTAAGAACAATGTGTTCATGCCATCCAGTTTCTGTCAGTCCCCGACAGGAAATAATAATTCAGATTCAGAACCTGaggagaaaacagttGGGTTTCGCCTGAAGCCTCCCACCCTGATCCATGGACAGGCTCCTAGTGCAGGTGTCCCGAGCCAGAAACCCAAGGAACTGCAGCGCAGTGTACTACGACCAGCAGTACTGCAGGCCCCTCTGGCCACCAAATCACTAACCCAAACCGGGTTGAACAGTGGTACAAATGGAGTGGACAGGTCATCAGAGGGTCTACCAGTTACCCAGAACAACACAGAGAAGTGTGATGACACGACCACGTCACAGGTTGAGCAGAGcagtgaacagaaaggctctacATCAGCAGAATCAGGGGAAACCAATTATTTCCTACAATACAGAAGCACTCCCAGCTTACAGAAGGCTGAGAACAAGGCTGATGACGGGGATAAGTTTGTGTTTGGACAGAACATGTCGGATCGTGTCCTGAGTCCGTTGAAATGTGAACAAGCAGCCGAGGGCAGCGGAGATCCCCCCACCGCCCCGCCCTGTGAGCTCCCGTCAAAAGACAGCAGCCCTGATAAAGATAACAATGTGACAGGGTCTTTGGAGGAGTCGGCGGCGGCCTACACCAAAGCCACAGCCAAGAGGTGTTTGTTAGAGAAAGTAGAGGTCAGAACTGGAGAGGAGTCGGAGAGTAACGTTCTTCAGGTCCAGTGCAAGTTATTTGTGTTTGACAAAGCCTCCCAGTCTTGGGTTGAGAGAGGCAGAGGACTGCTAAGGCTCAATGATATGGCTTCCACAGAGGAGGGATCGTTACAGTCCAGGCTGGTGATGAGGACCCAGGGCAGTTTGcgtctgatcctcaacaccaaACTGTGGCCTCAAATGCAGACGGACAAGGCCAGCGAGAAGAGTGTCCGCATCACAGCCATGGACACTGAGGACCAGGGGGTCAAGGTCTTCCTCATATCGGCAAGCTCTAAGGACACAGGGCAGCTGTATGCAGCGCTGCACCATCGTATTCTGGCCCTGCGGAGCCGCTCAGACCAAGAGCCAGAGCCCAGGGTCCCCATCCCAGATGGCCACATCCCTCATCCTCAGTCTAACGGGGAGGATAGTGATGAGGACGAACCGCTCACACCCACTGCCAACACTacagaggGTCCAGAGGCCCAGTCCTGCGGGACTGGCAGTGGGAGTGGGTCTTCATAGCACCTGCCCCCCTTCATCGGCTCACGCACTGCAGTCAGGACCACCTTACAGACCCCTCCATGGACACCTCAGGCCAGCATCTCCCCAGTGGTCTGAGGTCACAGTGGAGTGCCAGGAAGGATCCTATGCTGGTGTTACTAAGTTAACTCTGCAGTTCACACTCTGGATTCACAGTTTATCTGGGATGGATGGTCTTTTTTGTTTAGTatttgtcttctttttttttttttacctctagaACTGGATTTtgg

Function

NR:

description
ran-binding protein 3-like

GO: NA

KEGG:

id description
K15304 RANBP3; Ran-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581489.2 False 1881 mRNA 0.51 16 19641892 19661285
XM_036964016.1 True 1914 mRNA 0.51 16 19641892 19661285

Neighbor

gene id symbol gene type direction distance location
LOC110503198 LOC106573556 coding upstream 4 19636713 ~ 19641888 (+)
LOC110502681 LOC106573553 coding upstream 13851 19620185 ~ 19628041 (+)
LOC110502566 LOC106573551 coding upstream 44357 19583179 ~ 19597535 (+)
LOC110502506 LOC106573550 coding upstream 68455 19568684 ~ 19575028 (+)
LOC118944665 NA coding upstream 86469 19553236 ~ 19561396 (+)
LOC110503571 LOC106573562 coding downstream 177735 19839020 ~ 19840715 (+)
LOC118944655 NA coding downstream 183127 19844412 ~ 19847992 (+)
LOC110503761 NA coding downstream 189198 19850483 ~ 19855038 (+)
LOC110503939 LOC106573564 coding downstream 202449 19863734 ~ 19865619 (+)
LOC110504002 LOC106573565 coding downstream 240395 19901680 ~ 19906211 (+)
G18501 NA non-coding upstream 8781 19630389 ~ 19633111 (+)
G18484 NA non-coding upstream 23094 19566814 ~ 19618798 (+)
G18482 NA non-coding upstream 24314 19565940 ~ 19617578 (+)
G18480 NA non-coding upstream 78489 19562906 ~ 19563403 (+)
G18515 NA non-coding downstream 46 19661331 ~ 19661968 (+)
G18513 NA non-coding downstream 821 19662106 ~ 19663909 (+)
G18516 NA non-coding downstream 2724 19664009 ~ 19664221 (+)
G18523 NA non-coding downstream 11149 19672434 ~ 19672638 (+)
G18533 NA non-coding downstream 28670 19689955 ~ 19690162 (+)
G18481 NA other upstream 76671 19564849 ~ 19565221 (+)
G17420 NA other upstream 685684 18882723 ~ 18956208 (+)
ccdc124 cc124 other upstream 1650716 17975918 ~ 17991176 (+)
LOC110495874 LOC106573877 other upstream 1976884 17654164 ~ 17673094 (+)
G19083 NA other downstream 254301 19915586 ~ 19915832 (+)
G19359 NA other downstream 581360 20242645 ~ 20242875 (+)
G19380 LOC100194703 other downstream 615305 20276590 ~ 20276895 (+)
G19400 NA other downstream 648140 20309425 ~ 20309898 (+)

Expression


Co-expression Network