LOC110503198 (LOC106573556)


Basic Information

Item Value
gene id LOC110503198
gene name LOC106573556
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19636713 ~ 19641888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581594.2
tggctcagcgtcgtccagatttggccggtgtaggccatcattgcaaagaagaatgtgttcttattaactgacttgcctacttaaataaagattccattttttatatatttttttaaagaaacatcccACAACATTGAAAGTCTTGAACGAGCCCAAGACAGCGCGTCATACAAGTCAGATGAGCCAAGTCATATGACCTATGCCAGCTAACGGAAGCAGAGGAAAACAAAGCACCACTCAGCTGCGGTAGCGTATAACGTTAATCTGTTGATTTCATGATTAGTTAGTTGAACTAACTATTGTTAAGACGCAGCAATGTAGCAAGCTGATTTACCGCAAATGAATATGGCACATTGCTGTTAGTTCAGCAAGGCCCGTGCCCTGAAGATGGCAGATAATAACTTTCTTTCAGTCTTGGTCATAACACTCTGTACGGTCATTACATGTGATGGGAGTGTATCCCTGTCTGCTCCAGCCACTGTAAATCTGGAGGTCAAAGGTTCAGCCAATATCACCATAACACCTAGcTCTCCTCTTAATGTGTCCGCACTTATTTCTTTTAACTTCACTGACTCCTCTGCAAATGTTACCTCGATACTTCAACTGCCTCAGCAGGTACAATTGCCTGCAAATGCCATATTAGGCACATTTGAGGTTCGTGCAGAGCATGTGGGTCAGGTGACTGCCTATTTATACAGTAACAACAATGACATTGCAAGCTTTAAGACCAGAATCCGTTTCTTGGTCATTAGAAGCAACATCATCGATATCATTAACCAATTAATTGGTTGGATTTACTTCCTTGCATGGTCTATCTCATTCTACCCTCAAGTATATGAGAACTGGAGAAGAAAAAGTGTGGTGGGGTTGAACTTTGATTTCCTGGCACTCAACTTGACAGGCTTCATTGCGTACAGTGTCTTCAATGTAGGCCTCTTCTGGGTTCCGTACATGAAGgaAGAGTTTGTGAAGAAAAATCCAAACGGTGTGAACCCAGTGGATGCCAATGATGTGTTTTTTAGTCTTCATGCAGTTGTGCTGACAGTTGTGTATATCTGTCAGTGTGCCATCTACGAGAGAGGAGGGCAGAAGTTGTCCAAGATCGCTATTGGCCTTCTGGTGATTGGGTGGACATTTGCCCTTGTCACCCTCTTTGTTGCTGTGGCCAATAAGATCACCTGGCTGGAATATCTCTATTATTTCTCCTACATTAAGTTAGGAGTCACCCTCGTCAAATACATCCCACAGgcctacATGAACTACCAAAGACAAAGCACGGAAGGGTGGAGCATTGGCAATGTGTTGCTGGACTTCACAGGAGGCAGCTTCAGTCTCATTCAGATGATCCTTCAGTCGTATAACAACAATGAATGGAAGCTCATCTTTGGCGACCCCACAAAGGCTGGACTTGGTTTGTTATCCATATTCTTCGATGTGGTGTTCATCTTTCAGCACTACTGTCTATACCGGCATAAAACACATTACGAGCCTATGGGTGACCAGAAATAGGCTAATaacctctcactctctacctctgccAGTGAAACTGGGGCCAAATGACTTCCTATAGGGATTTATTCTATGCAGTGTTCACAGCCACTGAATGAAAAGCTATTTCAACATAGGGCCTTTGCttaaaaattattttttttctccaaatgattGTTTAGGATAATAGGGATTTATTTTTGTTCCATAATTTGTGAAGAAATGATTAGTTATGGTTTGATACCACTAAGGGAGGGACTCTGTAATCTTTTTAAAAACTGACTGTATAGGCCTATCACTTTTACATCTGTCAAAGCAATAGTTCATTTTATACAATACAATTGTTTATTTTGAAATGTGTTCTTTAATTGAAAGGTAATTTCTATTTTGAAATGTAACTAGAACATCATGCTTTATTGTCAAATTAGTAAAATGTTTTCCACGAA
>XM_021581661.2
ggctcagcgtcgtccagatttggccggtgtaggccatcattgcaaagaagaatgtgttcttattaactgacttgcctacttaaataaagattccattttttatatatttttttaaagaaacatcccACAACATTGAAAGTCTTGAACGAGCCCAAGACAGCGCGTCATACAAGTCAGATGAGCCAAGTCATATGACCTATGCCAGCTAACGGAAGCAGAGGAAAACAAAGCACCACTCAGCTGCGAGTTCAGCAAGGCCCGTGCCCTGAAGATGGCAGATAATAACTTTCTTTCAGTCTTGGTCATAACACTCTGTACGGTCATTACATGTGATGGGAGTGTATCCCTGTCTGCTCCAGCCACTGTAAATCTGGAGGTCAAAGGTTCAGCCAATATCACCATAACACCTAGcTCTCCTCTTAATGTGTCCGCACTTATTTCTTTTAACTTCACTGACTCCTCTGCAAATGTTACCTCGATACTTCAACTGCCTCAGCAGGTACAATTGCCTGCAAATGCCATATTAGGCACATTTGAGGTTCGTGCAGAGCATGTGGGTCAGGTGACTGCCTATTTATACAGTAACAACAATGACATTGCAAGCTTTAAGACCAGAATCCGTTTCTTGGTCATTAGAAGCAACATCATCGATATCATTAACCAATTAATTGGTTGGATTTACTTCCTTGCATGGTCTATCTCATTCTACCCTCAAGTATATGAGAACTGGAGAAGAAAAAGTGTGGTGGGGTTGAACTTTGATTTCCTGGCACTCAACTTGACAGGCTTCATTGCGTACAGTGTCTTCAATGTAGGCCTCTTCTGGGTTCCGTACATGAAGgaAGAGTTTGTGAAGAAAAATCCAAACGGTGTGAACCCAGTGGATGCCAATGATGTGTTTTTTAGTCTTCATGCAGTTGTGCTGACAGTTGTGTATATCTGTCAGTGTGCCATCTACGAGAGAGGAGGGCAGAAGTTGTCCAAGATCGCTATTGGCCTTCTGGTGATTGGGTGGACATTTGCCCTTGTCACCCTCTTTGTTGCTGTGGCCAATAAGATCACCTGGCTGGAATATCTCTATTATTTCTCCTACATTAAGTTAGGAGTCACCCTCGTCAAATACATCCCACAGgcctacATGAACTACCAAAGACAAAGCACGGAAGGGTGGAGCATTGGCAATGTGTTGCTGGACTTCACAGGAGGCAGCTTCAGTCTCATTCAGATGATCCTTCAGTCGTATAACAACAATGAATGGAAGCTCATCTTTGGCGACCCCACAAAGGCTGGACTTGGTTTGTTATCCATATTCTTCGATGTGGTGTTCATCTTTCAGCACTACTGTCTATACCGGCATAAAACACATTACGAGCCTATGGGTGACCAGAAATAGGCTAATaacctctcactctctacctctgccAGTGAAACTGGGGCCAAATGACTTCCTATAGGGATTTATTCTATGCAGTGTTCACAGCCACTGAATGAAAAGCTATTTCAACATAGGGCCTTTGCttaaaaattattttttttctccaaatgattGTTTAGGATAATAGGGATTTATTTTTGTTCCATAATTTGTGAAGAAATGATTAGTTATGGTTTGATACCACTAAGGGAGGGACTCTGTAATCTTTTTAAAAACTGACTGTATAGGCCTATCACTTTTACATCTGTCAAAGCAATAGTTCATTTTATACAATACAATTGTTTATTTTGAAATGTGTTCTTTAATTGAAAGGTAATTTCTATTTTGAAATGTAACTAGAACATCATGCTTTATTGTCAAATTAGTAAAATGTTTTCCACGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12386 CTNS; cystinosin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581594.2 False 1934 mRNA 0.41 11 19636713 19641888
XM_021581661.2 True 1818 mRNA 0.41 11 19636714 19641888

Neighbor

gene id symbol gene type direction distance location
LOC110502681 LOC106573553 coding upstream 8672 19620185 ~ 19628041 (+)
LOC110502566 LOC106573551 coding upstream 39178 19583179 ~ 19597535 (+)
LOC110502506 LOC106573550 coding upstream 63276 19568684 ~ 19575028 (+)
LOC118944665 NA coding upstream 81290 19553236 ~ 19561396 (+)
LOC110502309 LOC106573548 coding upstream 87061 19538738 ~ 19549652 (+)
LOC110503136 LOC106573555 coding downstream 4 19641892 ~ 19661285 (+)
LOC110503571 LOC106573562 coding downstream 197132 19839020 ~ 19840715 (+)
LOC118944655 NA coding downstream 202524 19844412 ~ 19847992 (+)
LOC110503761 NA coding downstream 208595 19850483 ~ 19855038 (+)
LOC110503939 LOC106573564 coding downstream 221846 19863734 ~ 19865619 (+)
G18501 NA non-coding upstream 3602 19630389 ~ 19633111 (+)
G18484 NA non-coding upstream 17915 19566814 ~ 19618798 (+)
G18482 NA non-coding upstream 19135 19565940 ~ 19617578 (+)
G18480 NA non-coding upstream 73310 19562906 ~ 19563403 (+)
G18515 NA non-coding downstream 19443 19661331 ~ 19661968 (+)
G18513 NA non-coding downstream 20218 19662106 ~ 19663909 (+)
G18516 NA non-coding downstream 22121 19664009 ~ 19664221 (+)
G18523 NA non-coding downstream 30546 19672434 ~ 19672638 (+)
G18533 NA non-coding downstream 48067 19689955 ~ 19690162 (+)
G18481 NA other upstream 71492 19564849 ~ 19565221 (+)
G17420 NA other upstream 680505 18882723 ~ 18956208 (+)
ccdc124 cc124 other upstream 1645537 17975918 ~ 17991176 (+)
LOC110495874 LOC106573877 other upstream 1971705 17654164 ~ 17673094 (+)
G19083 NA other downstream 273698 19915586 ~ 19915832 (+)
G19359 NA other downstream 600757 20242645 ~ 20242875 (+)
G19380 LOC100194703 other downstream 634702 20276590 ~ 20276895 (+)
G19400 NA other downstream 667537 20309425 ~ 20309898 (+)

Expression


Co-expression Network