LOC110503571 (LOC106573562)


Basic Information

Item Value
gene id LOC110503571
gene name LOC106573562
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19839020 ~ 19840715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582003.2
gtatgtAAAGCTGTCAACACTACTGTTTCCGGGGCGGAGTTTAATCCACAGGTTACAAAGAGAATCAGTTTCAAAGTTCATTCAAGTTATCCAGCTTTTTTTAAATTTCAAAACAGTGCAGATAACGAACGAGTATATAGCTCGAGGCATGTTGTTCGTAATGAATCAATTCAATTATATATTGATGCATTTCTTATGAGTTTTGGAGCTTAGAATCTCGTAGGATGACGTGTCGGTAGCGGTAGCTGGTTAGCATAACATAATCAATACTTTTTTTCTGGACACGGAACAATATTTTTTGGTTCAGTTGTTTAACGAGGAACAAACGCTGAAGAGGGTGCAGGCATGGCGGGAAGAGTaaacaccagccctccgGTCGTACCATATTCCTCATGTGACATGTCCTCGCCATCACCAGTCCAAATTCGGGAGGCGAACGCACACCTGGTCGCTGTGCACAGGCGGGTAGCAGAGCTGGAACAGTGGCTCGAGGCAGCAGAGAACACCGTGAGGGAGCAAGCAGAGAGTCTCATCAGGAAGGACGAGCAACTGAGGGCTGCTACCCAGGAGATCGCCGAGGCCAAGGATAAAGAGATTCACTACCTCCACGAGAAGCTGTGCAAGTCAGAAGAGACCATCCAGAGGTTTCAGAACATGGTCAAGGAGAAGGATGCTATGATAGGACAGTTGCAACATCGCTGCCAGCTCCTGGACAACATCTGCAAGAGCAGGCCTTTACTAGACAGTATGCTGTCCCATATGGCTGAGGCAGAAAGACTTGGGCCAGTTGTGGGGATGGGTGAACCCACTGCCAATACGTCCCTCACAGACGGGGAGTCAAACTGCAGTCCCAACCGCATCTCTAACCACAAAGACTTCTCCCTCAGTGAGGATGACATGGATGACCAGGAGCTGGATGAGATAGTGTTTGGAACAACGGTATAGTAAAAGGCCCCTGAGAAGAGTTACATAGGTTAGAGGTGAAAAGGTTCTAGAAGAGGATAGTACTTGAAGTAGAGGCATGAGTAATTTCAAAACATCATGCATGTCGTTATTTTTTTAATGTTCAAGTAGTTCTGTATGTTAAGCAGATGACTTACAACTTAACATCTTACATGAATGTGGGGGAACTGCTTGACACGTTATGAAGCCTTTGATGTAACCAAATGGAGAGAAACTAATCTGCCTTGATTCCATGTCTTAACCAGATGTGAAATGTATAGACATCTGGTTATCGTCTGTTACTGTTTGAACTGCTATATTTTTATACTGTAATATCAAATATTTGGAAATAGTGTAAACAGGACCTCTATGGTCAGTGTTCACCTGGTCAAAGTTCAGAAAGTACATCTGCAGCACCTGCAAGGCTAGGTTCCAATCCATCCCATgctttgtatatgtagtgtatactTTTAATCTTTTTTTTCGTGACAATTCAGTTTTTTCAGGGATTGTAGTTACTCCCTTGTAAACATGACA

Function

NR:

description
vimentin-type intermediate filament-associated coiled-coil protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582003.2 True 1479 mRNA 0.44 3 19839020 19840715

Neighbor

gene id symbol gene type direction distance location
LOC110503136 LOC106573555 coding upstream 177735 19641892 ~ 19661285 (+)
LOC110503198 LOC106573556 coding upstream 197132 19636713 ~ 19641888 (+)
LOC110502681 LOC106573553 coding upstream 210979 19620185 ~ 19628041 (+)
LOC110502566 LOC106573551 coding upstream 241485 19583179 ~ 19597535 (+)
LOC110502506 LOC106573550 coding upstream 265583 19568684 ~ 19575028 (+)
LOC118944655 NA coding downstream 3697 19844412 ~ 19847992 (+)
LOC110503761 NA coding downstream 9768 19850483 ~ 19855038 (+)
LOC110503939 LOC106573564 coding downstream 23019 19863734 ~ 19865619 (+)
LOC110504002 LOC106573565 coding downstream 60965 19901680 ~ 19906211 (+)
LOC110532018 LOC106573567 coding downstream 137129 19977844 ~ 20093947 (+)
G19023 nduab non-coding upstream 223 19836538 ~ 19838797 (+)
G19020 NA non-coding upstream 6109 19832691 ~ 19832911 (+)
G19013 NA non-coding upstream 10603 19828093 ~ 19828417 (+)
G18621 NA non-coding upstream 18859 19819899 ~ 19820161 (+)
G18616 NA non-coding upstream 26905 19811793 ~ 19812115 (+)
G19041 NA non-coding downstream 17436 19858151 ~ 19858718 (+)
G19050 tmprss9 non-coding downstream 26349 19867064 ~ 19867364 (+)
G19051 NA non-coding downstream 27855 19868570 ~ 19868771 (+)
G19052 NA non-coding downstream 28184 19868899 ~ 19869163 (+)
G19054 NA non-coding downstream 29727 19870442 ~ 19870786 (+)
G18481 NA other upstream 273799 19564849 ~ 19565221 (+)
G17420 NA other upstream 882812 18882723 ~ 18956208 (+)
ccdc124 cc124 other upstream 1847844 17975918 ~ 17991176 (+)
LOC110495874 LOC106573877 other upstream 2174012 17654164 ~ 17673094 (+)
G19083 NA other downstream 74871 19915586 ~ 19915832 (+)
G19359 NA other downstream 401930 20242645 ~ 20242875 (+)
G19380 LOC100194703 other downstream 435875 20276590 ~ 20276895 (+)
G19400 NA other downstream 468710 20309425 ~ 20309898 (+)

Expression


Co-expression Network