LOC110502681 (LOC106573553)


Basic Information

Item Value
gene id LOC110502681
gene name LOC106573553
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19620185 ~ 19628041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580947.2
AACTCCTCGGCGCCCCTAAACGTTGTGAAACATTGACTACAGAACACCCACGATGCTGAATAGAAAACATGACAGATCAAGACACTAATTAAGAACTCTATCATATCTGTTACATTCAATTGCCATCTCCATTTCTCTATTGCTGTAGAAATGTGGGCAAGTATTAATTGTTTGTAGCTAGACCTGTCATAAATATTGAATTTGATTGGCCTACCTTTCAATAAAATGTTCCATGTTTATCATTACATTAGATTCACGTGATATAGAAAAGTGCTCCAGCTGCGTGTCCAGAGATTTAGTGCTGCCTTGTCTATATCAGTCTCTAATGGATATTAATACACGGTGATAATAGGATTGGCAGGGTGATGCCCTGAGGTTTAGTGATGGTGAGCCACTCCATTCACACACACTGTATCATTTCTACTGCTGGACTTGAAGGATGAGGGATCCGCAACTACCAGGACTCAAATCCAGACTAGCATGGCCGAAACGCAAGGACAAGGAGGATAAGAAAGCCAAGACAAGTGAGACAAGTGTAACGCCATTGGACAAAACACCGAAAGTCCTTTCAACCCGTCCTATTATACCAGAACTGACCCCAGAACAGAGGATGAGGCAGACACCATTTGAGAGGGTGCTTTATGACATGAACCATGACCAGAGGGTAGTCAACGACCTCATACTGGGCCGGAGGATCTCCTTCTACGAGCTCAGGGGGGAAATAGGGTGTGGGAACTTCTCCCACGTTAGATTGGGTATCCATGCCCTGACTAAAGagAGGGTCGCAATCAAGATTTTGGATAAGCTTCGGCTGGACAAGAAGTCTCAGTCCCTGTTTGCCACAGAGATCAGCTGTATGGAGAAGCTGTCCCACCCTAACATTGTTCGTCTCTATGAGGTGATTGAGACCACCAAGCGCCTGTACCTGGTGATGGAGTATGGTAGTGGAGGAGACCTCTACTCACGTATCACCAACCGGGGGCGTCTGTCTGACCTGGAGACCAAGCTCATCTTTGCCCAGATCATCTCTGCCATCAAACACATGcatgacaacaacatcgTCCACCGAGACCTGAAAGCGGAGAACATCTTTTACACCACCAGCTACTGCATCAAGGTGGGAGACCTTGGCTTCAGTATCGTGAGTGCTCCATCTGAAGTCCTCACCACGTTCTGTGGCTCCCCACCCTACGCCGCTCCAGAGCTCTTCAAAGACAAAGGCTACGTGGGTCGTTACGTGGACATCTGGGCCTTGGGAATCCTGCTCTACTTCATGGTCACCGCCACCATGCCTTTCCACGCCGACAACCTTGGTCGTTTGAAGCGCTGTATCATGCAGGGAGCCTACGCCTTCCCTGACTATGTACCCAACCCCTGCCAACTGGTCATAAAGGGCATGCTGAGGTCCGTGCCCGCTGACCGTGACCCCATCTCCCTGATAATGACCAGCACGTGGCTGAAGAGCATTGAGTACCCTCGGGCGTACGCCCCGCTGCCCCAGACACCCTTTCACCTGGCTGAAACCTCCCAGGTCCTGTGTGTGGAGGAGCAGGAGGTGAAGTCGGCCCTGTCTGATCTGGGCATCAAGGGAGTCCACCTGCAGAACAACACCTATACAGACAATCGCAGCCCCCTGACGGGGACGTACCGTATCCTCCTCCACCGTGTCCAGAAGAGGAGGTCTGTGGAGGCAGTGGGATACGCAGCCCTTTACCCTGAGGACTTTGGCAGTAAGAACGGCAGGACGACCACTGCTGTTATGGACAAGCACAACCCTACCAGTGTCTGTGTTATCCTATAGACCAGGGATTTTGCAATAGTTtttgaaccagggactggaaAATTATGGATATTCTCTTTGGATTAAAACAAACAATTTTGGTGGGCCACTTATAATGAAATTGAACACTTCAGAAGTGAAGTTCTCCCATAACTATGAACTATCTGAGGGACCTGTCAGCAACATCTCAGGAACCAGTGCTGCTCCATGGACCTCCATGGAGGTTGAGAAATAATGCTACAGAGTCTGGCCTCCTGTATAGCCAGGCTCCACCAGAAGAGAAtcacaagacaaacacacaccacaaacgcacacacacatacacacactacactcacGGATTTGTTGTCGCATATTCATCGCAGTACAGATGATAGATAGATAAATAGCACCATCTTGTGCTCACATTAATCATTACATTTCAGTACTCCTAAGAAATCTGTGACAGAAAGATACAATGGTGAAAAGGTTAAGATGTCAGGGTTGTAATGTAAAGTACATGAATTATATTGCAGCTTTATGTACTAACAAGGCTACAGTAATTGACTTCAGCTTCAGCTTGTTGCGATGTTACATCACTCAATAGGTCTATGTTTTGTACAATTGGCTTACAGCGAGAGACGAAGGATTAATAATACTATCAGCATCTTCCAAGCCTACTTTGTCCTGTACTTCGTGAAAATATAACTGGGGTCGTGCTCGTGGAAGGACGTGGCTAATTTGTCTTAGCTGTGATACAGGAAAAGTGCTTTGTTCAGATAGCAATTGTAAGGGAGTCAGGCACGAAGCACTGGCCAATGCTCTGATATTTGGATTACAGTACTTAGGTTTATCCTCAAAGACTTGTATGCCTTCAACATTAATGTAAATATAACAAATATAATCTTTAGGTAAATTCACAAGCTCTATTCACAAGTACATTGAAAAATGTGTAAAACATAGATGTTTTGTGCACAGTTCTTTATTTAGGCTATTCAGTGGCTTGGAAGTGCAATGTTTTGTCTGAAGATTAATATCTTTATTATGATATaatgtaattaaaatacagtaacaCATTGCTTATGTAGATATTTTTGTACGGTCATTTTATAAATGCTTTACTGATATACTTTATGTGGATTAAGTATATCAGTAAAGTATTTATAAAATGTTAATAAATATCATTTGCCATTGGATGTGCCCATTAATGCTCAAGAGAAATGTCATTTAAATATATGCCTGAGatgagtaaaaaataataatattgcaTTGTGTATTGCTATACCATTtaaataattaaaaataaataaaacatacatATCAagacaaattcattaaaaaaattataataatcaatCACCTCTTGTGAGTTCAGGGGGCATACCTGGTGCTAGTAACAGTGGAAAGGTCTTTAGGGAAGACTGACAAGTTTATATTGTGAGTATCCCCTAAGTGGAAATCTGAGCAGCATTTGAATATCATCTGTGTACTTGAAGCACATATTTGTTCATTTTTTTACATCATGGACATCACAGAACCTCAACATCTTACAGAAAATAGATACTAGAGAGTATGTTGTTCTATTATCAGTCAAAGTCAATAAAAGTATAAAACTTCCAAAGCCTTTTTAGAGGTTTTGCAGGTTCTTATGAGGTCACTCATAACGCAACCTACGCTCTCATAAAAATCAGGACGGTTGGATTGTATAAACATTAGCAGTTTCTCTAACTGCCCTCCCATCTTACTCAACATACATTTCCCCTGAAGCTATTACCACCTCTATGATCCAAGCAGTGATAAAACCTGTCAGCACTTTACCTTTTCTCTCATTATTGTGTGCCAGGTTCTTACAGTTTGTACATGTacctgttctgttcctctccattGATTGGCAGTCTGGCAGGGCAATATATTTTGCAATAATGAGATGAACCCCAGTCATGCCTTTGTCAATAAGGATCcgcaccttaaaaaaaaaaaatgtgttgaaaTTTTTGCTTAAAAtcacatacccaaatctaactgcctgtagctcaggacctgaagcaaggatatacatat
>XM_036963710.1
AATCAGCACTATGCACACATGCCAATCACTGCCTTTTCTCCTCTTACTAGACAGTTTAGTTTATTAATAACAACCATTTAAGAAAAtaagcacacataaaacttgaaaagccatacatgcacatgagTAAAATCCTTGAGGAtaacacaataaagtctgggacttatttccattgttaaatgcATTGCTCTTTATGTAGTTTTCCTTTCGATTTGTAAATGGTTCGTTATTGATTGATTTACTGTATCTGAGGGACTGAATGATTTGTTTCGCTGggataaaaaaaactaaacagatCCATATATTTGACCATGGGGAGTTCTTAGAGTCAATACTGCTGTGCTATTTGCTGTGCTAAGTGTCGCTGTCTCCAATATGCACTAGTAAGAATAGTCAATGTCACTTAAAGCTGTTAAGATGATTATTTAGCTGGCCGGACATTCCGTTCAAGTCAACAGGAGTCTCCTGCATGGAGATTAGTGTGAGCCAATCTCATTATGACTGTCCTGCAGACTGCACATTTACCCAGAGGTAATGGTGGAGCTCCACGTCTGCAATTAAATCACCTTTTGTAACGATGACCTAAAATAAATATTGATGGCTATTATGAATCCTTAAGGCCAGTCAGAGCATCAGCAGAGCTGTGCCCCAAGCCTCTAACAAAGAATGCCAGATAGAGAGAGTTATAATATGTGACAGTTTGAATTGATGCTCCTTTGTATCAATGCTCAATTATCAATTTTATCCAATAGGAGCTAACAGGGATAAGAAAGACAGGTAAGTAATTTATATCAATGCATGATAGAAGGGAGAAGTAGGATATTTAAGAAGTTGTGTGATGTTATTTTATGTGAATAGAGCTAACTGGCGAGGCCATAgaacatctacacacaatagtccCAAATCGGAATCCCTGCCATTGAACACAGGGAACCTCACCCAAATTAAAATCTCACCTGTAATTCATTTTTTTCCTTTGGGCCTTTTAGGACTCAAATCCAGACTAGCATGGCCGAAACGCAAGGACAAGGAGGATAAGAAAGCCAAGACAAGTGAGACAAGTGTAACGCCATTGGACAAAACACCGAAAGTCCTTTCAACCCGTCCTATTATACCAGAACTGACCCCAGAACAGAGGATGAGGCAGACACCATTTGAGAGGGTGCTTTATGACATGAACCATGACCAGAGGGTAGTCAACGACCTCATACTGGGCCGGAGGATCTCCTTCTACGAGCTCAGGGGGGAAATAGGGTGTGGGAACTTCTCCCACGTTAGATTGGGTATCCATGCCCTGACTAAAGagAGGGTCGCAATCAAGATTTTGGATAAGCTTCGGCTGGACAAGAAGTCTCAGTCCCTGTTTGCCACAGAGATCAGCTGTATGGAGAAGCTGTCCCACCCTAACATTGTTCGTCTCTATGAGGTGATTGAGACCACCAAGCGCCTGTACCTGGTGATGGAGTATGGTAGTGGAGGAGACCTCTACTCACGTATCACCAACCGGGGGCGTCTGTCTGACCTGGAGACCAAGCTCATCTTTGCCCAGATCATCTCTGCCATCAAACACATGcatgacaacaacatcgTCCACCGAGACCTGAAAGCGGAGAACATCTTTTACACCACCAGCTACTGCATCAAGGTGGGAGACCTTGGCTTCAGTATCGTGAGTGCTCCATCTGAAGTCCTCACCACGTTCTGTGGCTCCCCACCCTACGCCGCTCCAGAGCTCTTCAAAGACAAAGGCTACGTGGGTCGTTACGTGGACATCTGGGCCTTGGGAATCCTGCTCTACTTCATGGTCACCGCCACCATGCCTTTCCACGCCGACAACCTTGGTCGTTTGAAGCGCTGTATCATGCAGGGAGCCTACGCCTTCCCTGACTATGTACCCAACCCCTGCCAACTGGTCATAAAGGGCATGCTGAGGTCCGTGCCCGCTGACCGTGACCCCATCTCCCTGATAATGACCAGCACGTGGCTGAAGAGCATTGAGTACCCTCGGGCGTACGCCCCGCTGCCCCAGACACCCTTTCACCTGGCTGAAACCTCCCAGGTCCTGTGTGTGGAGGAGCAGGAGGTGAAGTCGGCCCTGTCTGATCTGGGCATCAAGGGAGTCCACCTGCAGAACAACACCTATACAGACAATCGCAGCCCCCTGACGGGGACGTACCGTATCCTCCTCCACCGTGTCCAGAAGAGGAGGTCTGTGGAGGCAGTGGGATACGCAGCCCTTTACCCTGAGGACTTTGGCAGTAAGAACGGCAGGACGACCACTGCTGTTATGGACAAGCACAACCCTACCAGTGTCTGTGTTATCCTATAGACCAGGGATTTTGCAATAGTTtttgaaccagggactggaaAATTATGGATATTCTCTTTGGATTAAAACAAACAATTTTGGTGGGCCACTTATAATGAAATTGAACACTTCAGAAGTGAAGTTCTCCCATAACTATGAACTATCTGAGGGACCTGTCAGCAACATCTCAGGAACCAGTGCTGCTCCATGGACCTCCATGGAGGTTGAGAAATAATGCTACAGAGTCTGGCCTCCTGTATAGCCAGGCTCCACCAGAAGAGAAtcacaagacaaacacacaccacaaacgcacacacacatacacacactacactcacGGATTTGTTGTCGCATATTCATCGCAGTACAGATGATAGATAGATAAATAGCACCATCTTGTGCTCACATTAATCATTACATTTCAGTACTCCTAAGAAATCTGTGACAGAAAGATACAATGGTGAAAAGGTTAAGATGTCAGGGTTGTAATGTAAAGTACATGAATTATATTGCAGCTTTATGTACTAACAAGGCTACAGTAATTGACTTCAGCTTCAGCTTGTTGCGATGTTACATCACTCAATAGGTCTATGTTTTGTACAATTGGCTTACAGCGAGAGACGAAGGATTAATAATACTATCAGCATCTTCCAAGCCTACTTTGTCCTGTACTTCGTGAAAATATAACTGGGGTCGTGCTCGTGGAAGGACGTGGCTAATTTGTCTTAGCTGTGATACAGGAAAAGTGCTTTGTTCAGATAGCAATTGTAAGGGAGTCAGGCACGAAGCACTGGCCAATGCTCTGATATTTGGATTACAGTACTTAGGTTTATCCTCAAAGACTTGTATGCCTTCAACATTAATGTAAATATAACAAATATAATCTTTAGGTAAATTCACAAGCTCTATTCACAAGTACATTGAAAAATGTGTAAAACATAGATGTTTTGTGCACAGTTCTTTATTTAGGCTATTCAGTGGCTTGGAAGTGCAATGTTTTGTCTGAAGATTAATATCTTTATTATGATATaatgtaattaaaatacagtaacaCATTGCTTATGTAGATATTTTTGTACGGTCATTTTATAAATGCTTTACTGATATACTTTATGTGGATTAAGTATATCAGTAAAGTATTTATAAAATGTTAATAAATATCATTTGCCATTGGATGTGCCCATTAATGCTCAAGAGAAATGTCATTTAAATATATGCCTGAGatgagtaaaaaataataatattgcaTTGTGTATTGCTATACCATTtaaataattaaaaataaataaaacatacatATCAagacaaattcattaaaaaaattataataatcaatCACCTCTTGTGAGTTCAGGGGGCATACCTGGTGCTAGTAACAGTGGAAAGGTCTTTAGGGAAGACTGACAAGTTTATATTGTGAGTATCCCCTAAGTGGAAATCTGAGCAGCATTTGAATATCATCTGTGTACTTGAAGCACATATTTGTTCATTTTTTTACATCATGGACATCACAGAACCTCAACATCTTACAGAAAATAGATACTAGAGAGTATGTTGTTCTATTATCAGTCAAAGTCAATAAAAGTATAAAACTTCCAAAGCCTTTTTAGAGGTTTTGCAGGTTCTTATGAGGTCACTCATAACGCAACCTACGCTCTCATAAAAATCAGGACGGTTGGATTGTATAAACATTAGCAGTTTCTCTAACTGCCCTCCCATCTTACTCAACATACATTTCCCCTGAAGCTATTACCACCTCTATGATCCAAGCAGTGATAAAACCTGTCAGCACTTTACCTTTTCTCTCATTATTGTGTGCCAGGTTCTTACAGTTTGTACATGTacctgttctgttcctctccattGATTGGCAGTCTGGCAGGGCAATATATTTTGCAATAATGAGATGAACCCCAGTCATGCCTTTGTCAATAAGGATCcgcaccttaaaaaaaaaaaatgtgttgaaaTTTTTGCTTAAAAtcacatacccaaatctaactgcctgtagctcaggacctgaagcaaggatatacatat

Function

NR:

description
serine/threonine-protein kinase NIM1-like

GO: NA

KEGG:

id description
K16310 NIM1; serine/threonine-protein kinase NIM1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580947.2 False 3820 mRNA 0.43 4 19620185 19628041
XM_036963710.1 True 4348 mRNA 0.42 3 19622680 19628041

Neighbor

gene id symbol gene type direction distance location
LOC110502566 LOC106573551 coding upstream 22650 19583179 ~ 19597535 (+)
LOC110502506 LOC106573550 coding upstream 46748 19568684 ~ 19575028 (+)
LOC118944665 NA coding upstream 64762 19553236 ~ 19561396 (+)
LOC110502309 LOC106573548 coding upstream 70533 19538738 ~ 19549652 (+)
tpm4a LOC106573547 coding upstream 83629 19510957 ~ 19536556 (+)
LOC110503198 LOC106573556 coding downstream 8672 19636713 ~ 19641888 (+)
LOC110503136 LOC106573555 coding downstream 13851 19641892 ~ 19661285 (+)
LOC110503571 LOC106573562 coding downstream 210979 19839020 ~ 19840715 (+)
LOC118944655 NA coding downstream 216371 19844412 ~ 19847992 (+)
LOC110503761 NA coding downstream 222442 19850483 ~ 19855038 (+)
G18484 NA non-coding upstream 1387 19566814 ~ 19618798 (+)
G18482 NA non-coding upstream 2607 19565940 ~ 19617578 (+)
G18480 NA non-coding upstream 56782 19562906 ~ 19563403 (+)
G18473 NA non-coding upstream 68128 19551844 ~ 19552057 (+)
G18501 NA non-coding downstream 2348 19630389 ~ 19633111 (+)
G18515 NA non-coding downstream 33290 19661331 ~ 19661968 (+)
G18513 NA non-coding downstream 34065 19662106 ~ 19663909 (+)
G18516 NA non-coding downstream 35968 19664009 ~ 19664221 (+)
G18523 NA non-coding downstream 44393 19672434 ~ 19672638 (+)
G18481 NA other upstream 54964 19564849 ~ 19565221 (+)
G17420 NA other upstream 663977 18882723 ~ 18956208 (+)
ccdc124 cc124 other upstream 1629009 17975918 ~ 17991176 (+)
LOC110495874 LOC106573877 other upstream 1955177 17654164 ~ 17673094 (+)
LOC110503939 LOC106573564 other downstream 235750 19863734 ~ 19865619 (+)
G19083 NA other downstream 287545 19915586 ~ 19915832 (+)
G19359 NA other downstream 614604 20242645 ~ 20242875 (+)
G19380 LOC100194703 other downstream 648549 20276590 ~ 20276895 (+)
G19400 NA other downstream 681384 20309425 ~ 20309898 (+)

Expression


Co-expression Network