RNA id: XM_021581594.2


Basic Information

Item Value
RNA id XM_021581594.2
length 1934
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC110503198
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19636713 ~ 19641888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggctcagcgtcgtccagatttggccggtgtaggccatcattgcaaagaagaatgtgttcttattaactgacttgcctacttaaataaagattccattttttatatatttttttaaagaaacatcccACAACATTGAAAGTCTTGAACGAGCCCAAGACAGCGCGTCATACAAGTCAGATGAGCCAAGTCATATGACCTATGCCAGCTAACGGAAGCAGAGGAAAACAAAGCACCACTCAGCTGCGGTAGCGTATAACGTTAATCTGTTGATTTCATGATTAGTTAGTTGAACTAACTATTGTTAAGACGCAGCAATGTAGCAAGCTGATTTACCGCAAATGAATATGGCACATTGCTGTTAGTTCAGCAAGGCCCGTGCCCTGAAGATGGCAGATAATAACTTTCTTTCAGTCTTGGTCATAACACTCTGTACGGTCATTACATGTGATGGGAGTGTATCCCTGTCTGCTCCAGCCACTGTAAATCTGGAGGTCAAAGGTTCAGCCAATATCACCATAACACCTAGcTCTCCTCTTAATGTGTCCGCACTTATTTCTTTTAACTTCACTGACTCCTCTGCAAATGTTACCTCGATACTTCAACTGCCTCAGCAGGTACAATTGCCTGCAAATGCCATATTAGGCACATTTGAGGTTCGTGCAGAGCATGTGGGTCAGGTGACTGCCTATTTATACAGTAACAACAATGACATTGCAAGCTTTAAGACCAGAATCCGTTTCTTGGTCATTAGAAGCAACATCATCGATATCATTAACCAATTAATTGGTTGGATTTACTTCCTTGCATGGTCTATCTCATTCTACCCTCAAGTATATGAGAACTGGAGAAGAAAAAGTGTGGTGGGGTTGAACTTTGATTTCCTGGCACTCAACTTGACAGGCTTCATTGCGTACAGTGTCTTCAATGTAGGCCTCTTCTGGGTTCCGTACATGAAGgaAGAGTTTGTGAAGAAAAATCCAAACGGTGTGAACCCAGTGGATGCCAATGATGTGTTTTTTAGTCTTCATGCAGTTGTGCTGACAGTTGTGTATATCTGTCAGTGTGCCATCTACGAGAGAGGAGGGCAGAAGTTGTCCAAGATCGCTATTGGCCTTCTGGTGATTGGGTGGACATTTGCCCTTGTCACCCTCTTTGTTGCTGTGGCCAATAAGATCACCTGGCTGGAATATCTCTATTATTTCTCCTACATTAAGTTAGGAGTCACCCTCGTCAAATACATCCCACAGgcctacATGAACTACCAAAGACAAAGCACGGAAGGGTGGAGCATTGGCAATGTGTTGCTGGACTTCACAGGAGGCAGCTTCAGTCTCATTCAGATGATCCTTCAGTCGTATAACAACAATGAATGGAAGCTCATCTTTGGCGACCCCACAAAGGCTGGACTTGGTTTGTTATCCATATTCTTCGATGTGGTGTTCATCTTTCAGCACTACTGTCTATACCGGCATAAAACACATTACGAGCCTATGGGTGACCAGAAATAGGCTAATaacctctcactctctacctctgccAGTGAAACTGGGGCCAAATGACTTCCTATAGGGATTTATTCTATGCAGTGTTCACAGCCACTGAATGAAAAGCTATTTCAACATAGGGCCTTTGCttaaaaattattttttttctccaaatgattGTTTAGGATAATAGGGATTTATTTTTGTTCCATAATTTGTGAAGAAATGATTAGTTATGGTTTGATACCACTAAGGGAGGGACTCTGTAATCTTTTTAAAAACTGACTGTATAGGCCTATCACTTTTACATCTGTCAAAGCAATAGTTCATTTTATACAATACAATTGTTTATTTTGAAATGTGTTCTTTAATTGAAAGGTAATTTCTATTTTGAAATGTAACTAGAACATCATGCTTTATTGTCAAATTAGTAAAATGTTTTCCACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21587 lncRNA upstream 3602 19630389 ~ 19633111 (+) True G18501
TU21566 lncRNA upstream 17915 19566814 ~ 19618798 (+) True G18484
TU21563 lncRNA upstream 19135 19565940 ~ 19617578 (+) True G18482
TU21561 lncRNA upstream 73310 19562906 ~ 19563403 (+) True G18480
TU21553 lncRNA upstream 75317 19556602 ~ 19561396 (+) False LOC118944665
TU21603 lncRNA downstream 19443 19661331 ~ 19661968 (+) True G18515
TU21601 lncRNA downstream 20218 19662106 ~ 19663909 (+) True G18513
TU21604 lncRNA downstream 22121 19664009 ~ 19664221 (+) True G18516
TU21611 lncRNA downstream 30546 19672434 ~ 19672638 (+) True G18523
TU21621 lncRNA downstream 48067 19689955 ~ 19690162 (+) True G18533
XM_021580947.2 mRNA upstream 8672 19620185 ~ 19628041 (+) False LOC110502681
XM_036963710.1 mRNA upstream 8672 19622680 ~ 19628041 (+) True LOC110502681
XM_021580824.2 mRNA upstream 39178 19583179 ~ 19597535 (+) True LOC110502566
XM_021580605.2 mRNA upstream 63276 19568684 ~ 19573437 (+) False LOC110502506
XR_005039991.1 mRNA upstream 81290 19553236 ~ 19555423 (+) False LOC118944665
XM_021581489.2 mRNA downstream 4 19641892 ~ 19661285 (+) False LOC110503136
XM_036964016.1 mRNA downstream 4 19641892 ~ 19661285 (+) True LOC110503136
XM_021582003.2 mRNA downstream 197132 19839020 ~ 19840715 (+) True LOC110503571
XR_005039952.1 mRNA downstream 202524 19844412 ~ 19847992 (+) True LOC118944655
XR_002470515.2 mRNA downstream 208595 19850483 ~ 19853561 (+) False LOC110503761
TU21568 other upstream 61685 19568785 ~ 19575028 (+) True LOC110502506
TU21562 other upstream 71492 19564849 ~ 19565221 (+) True G18481
TU20408 other upstream 680505 18882723 ~ 18956208 (+) True G17420
TU19716 other upstream 1645537 17975964 ~ 17991176 (+) True ccdc124
TU19135 other upstream 1971705 17654207 ~ 17665008 (+) False LOC110495874
TU22177 other downstream 221903 19863791 ~ 19865605 (+) True LOC110503939
TU22214 other downstream 273698 19915586 ~ 19915832 (+) True G19083
TU22535 other downstream 600757 20242645 ~ 20242875 (+) True G19359
TU22556 other downstream 634702 20276590 ~ 20276895 (+) True G19380
TU22579 other downstream 667537 20309425 ~ 20309898 (+) False G19400

Expression Profile