LOC110532051


Basic Information

Item Value
gene id LOC110532051
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20508105 ~ 20522381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532051
ATGAGACACTCCCACAATTATTACGGGTCTGAAGTGTTAGCAGAGTTGTCCTTCACTTGTGTCATTGACCTTGTGAGTTCTTTGGAACATGACTGTTTTCTCTCCGGAATTATGGAATTCTACCAGAAAATGGTTTGGACAGCCATCGTGATCTGCTACTGGGACGGAATAGTGCACTTTATCATGTACCTCATGATGATACAACGCTTATGGAACACTGTtATGTCTTATCATACCCTCGGTCTCTTCTGGGCTGGATCGTTGTTTGCCAACATGAGAGTCTTTGTGACAGGAGTTGTTGTAGGTCAATTTGGGTCAGATATCCGTCCTGCTTTCTGGTTCAACATGCCCTTCCTATTGCTTCCTATATGGGGAGCGATCAAGCTGTTTCAACATGTCCAAGACCGGGCCCACCCTCAGCGGATACAGGGTGAGATGGAGTAGGTCGCAGcatctcatctgttttagtctcatctgacgcACAACAGACCTTTTCCAGGTGCTGCTAATACTGGGGACCATGTCCTTCACTCTCTTCAGGGGCTTGGTGAGCCgggactccccTCTAGAGGCCTGTTCTGTCTACCTTGGCCAGTATGAGCCCTATCTGAAGGACCCGGGGGGCTACCCCAAGGTTATGATTCTGCACTTCCTGTTCTACATGCTGCCAATGCTTTGGGCCTTTGTCTATGGACTCATAGTGCCTGGCTGCATCTGGATGCCTGATTGGACTGTGTTCGAGGCATtctctctcacacagtgcCAGTGGGCCCACATTGGGGCATCCCTCCACCCACGTACTGTGGTCCCATTCCAGATCCCAGGCAAGGCCTTCCTGGCTGTCCTTGtatggtgtatgtttcatgattaacgactcatggtgtaattgtaacaacatacaagaactcaagtccttttgttcacctgacctagaattcctcacaatcaaattccgaccatattatctcccaataTACCGTATATCGGATaccaagacggccatcaaggaacttcactggactttatgcaaactggaaaccatatatcctgaggctgtatTTACTGTAGCTGAGGactttaacaaagctaatttgagaactatcgccccatagcactcactgcTGTCATCATgaggtgctttgagagactagtcagggatCATATCACT

Function

NR:

description
PREDICTED: transmembrane 6 superfamily member 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532051 True 1168 mRNA 0.48 9 20508105 20522381

Neighbor

gene id symbol gene type direction distance location
LOC110506010 polr2e coding upstream 187037 20318748 ~ 20321068 (+)
LOC110505394 LOC106573573 coding upstream 307539 20197087 ~ 20200566 (+)
LOC110532018 LOC106573567 coding upstream 414158 19977844 ~ 20093947 (+)
LOC110504002 LOC106573565 coding upstream 601894 19901680 ~ 19906211 (+)
LOC110503939 LOC106573564 coding upstream 642486 19863734 ~ 19865619 (+)
LOC110506309 hpln4 coding downstream 5904 20528285 ~ 20565572 (+)
borcs8 borcs8 coding downstream 400599 20922980 ~ 20931337 (+)
mef2b mef2b coding downstream 427726 20950107 ~ 20983313 (+)
LOC118945307 NA coding downstream 495826 21003934 ~ 21089252 (+)
LOC110507137 LOC106573592 coding downstream 611896 21134277 ~ 21141851 (+)
G19434 LOC106573581 non-coding upstream 133022 20374648 ~ 20375083 (+)
G19412 LOC106573580 non-coding upstream 170255 20336994 ~ 20337850 (+)
G19400 NA non-coding upstream 198207 20309425 ~ 20309898 (+)
G19399 NA non-coding upstream 198722 20309171 ~ 20309383 (+)
G19393 NA non-coding upstream 212027 20295780 ~ 20296078 (+)
G19622 NA non-coding downstream 172719 20695100 ~ 20695539 (+)
G19676 NA non-coding downstream 280478 20802859 ~ 20803085 (+)
G19680 NA non-coding downstream 286123 20808504 ~ 20808805 (+)
G19744 NA non-coding downstream 364835 20887216 ~ 20887681 (+)
G19747 LOC106604997 non-coding downstream 369901 20892282 ~ 20892517 (+)
G19380 LOC100194703 other upstream 231210 20276590 ~ 20276895 (+)
G19359 NA other upstream 265230 20242645 ~ 20242875 (+)
G19083 NA other upstream 592273 19915586 ~ 19915832 (+)
G20773 NA other downstream 1045164 21567545 ~ 21568188 (+)
G23109 NA other downstream 3016015 23538396 ~ 23538863 (+)
G23135 NA other downstream 3052211 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 3350640 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 3982274 24504638 ~ 24506125 (+)

Expression


Co-expression Network