G19434 (LOC106573581)


Basic Information

Item Value
gene id G19434
gene name LOC106573581
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20374648 ~ 20375083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU22617
CTAGGATTCCCATGTCGTATTTGCCCTCCTTTTTGTCCTTCTCGATCAGGTAGTCAAAGTTGTCGGTGAAGTACTGGAACAGAGAGTTCTGCTTGTGGACCTCCAGGCCCAGGATCCTGTTGAGGAACTTGGTGATGCTGCAGTCTTTCTCAGTGCTGAGACCAAACCGTGGCTCCTTGCAGAAGATACCCACGTCCATCATGCCATGCTTCATGTCTCTGAAGAACAGAGCATCACCCCCGGGGTAACCTTTGGGAGGGGACACCTTGCTCTCGATGTGGCCCAGGATGGCTTTGGTGATCTTATCCAGAGCCTTGGTACCGTACTGCAGAAACACACGGCAGGAAACC

Function

NR:

description
protein strawberry notch homolog 2-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22617 True 350 lncRNA 0.38 2 20374648 20375083

Neighbor

gene id symbol gene type direction distance location
LOC110506010 polr2e coding upstream 53580 20318748 ~ 20321068 (+)
LOC110505394 LOC106573573 coding upstream 174082 20197087 ~ 20200566 (+)
LOC110532018 LOC106573567 coding upstream 280701 19977844 ~ 20093947 (+)
LOC110504002 LOC106573565 coding upstream 468437 19901680 ~ 19906211 (+)
LOC110503939 LOC106573564 coding upstream 509029 19863734 ~ 19865619 (+)
LOC110532051 NA coding downstream 133022 20508105 ~ 20522381 (+)
LOC110506309 hpln4 coding downstream 153202 20528285 ~ 20565572 (+)
borcs8 borcs8 coding downstream 547897 20922980 ~ 20931337 (+)
mef2b mef2b coding downstream 575024 20950107 ~ 20983313 (+)
LOC118945307 NA coding downstream 643124 21003934 ~ 21089252 (+)
G19412 LOC106573580 non-coding upstream 36798 20336994 ~ 20337850 (+)
G19400 NA non-coding upstream 64750 20309425 ~ 20309898 (+)
G19399 NA non-coding upstream 65265 20309171 ~ 20309383 (+)
G19393 NA non-coding upstream 78570 20295780 ~ 20296078 (+)
G19390 NA non-coding upstream 84177 20290262 ~ 20290471 (+)
G19496 NA non-coding downstream 90207 20465290 ~ 20516818 (+)
G19526 NA non-coding downstream 144374 20519457 ~ 20524897 (+)
G19622 NA non-coding downstream 320017 20695100 ~ 20695539 (+)
G19676 NA non-coding downstream 427776 20802859 ~ 20803085 (+)
G19680 NA non-coding downstream 433421 20808504 ~ 20808805 (+)
G19380 LOC100194703 other upstream 97753 20276590 ~ 20276895 (+)
G19359 NA other upstream 131773 20242645 ~ 20242875 (+)
G19083 NA other upstream 458816 19915586 ~ 19915832 (+)
G20773 NA other downstream 1192462 21567545 ~ 21568188 (+)
G23109 NA other downstream 3163313 23538396 ~ 23538863 (+)
G23135 NA other downstream 3199509 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 3497938 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 4129572 24504638 ~ 24506125 (+)

Expression


Co-expression Network