G19412 (LOC106573580)


Basic Information

Item Value
gene id G19412
gene name LOC106573580
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20336994 ~ 20337850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU22591
CTTGAGAATGAGGTCTCCCTCCTGCAGAGTGCCCTCCTTGGCAGCCAGACCCGTCTCAGTCATGTGTTTGATGAAGATCTGGCTTCCCAACTTCAGTCCATACTCTGAAACAGGAAGGCAACATAAAATTGATATAGTGCAAGCCTTGCATTCACCCATCTATGTCAGACCTGCGATGATGTTTTGAAACCTTTTGTTACGGCGTGGCATAATAAACACGGCGCAAATTCTCTCCTGTTGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGCTGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTTGTTTCTCCTTACCGTCTGTTGTTTCTCCTTACCGTCTGTTGTTTCTCCTTACCATCTGTGAGTTTCTTCTTCAGCAGGGTGGCTTTGATTGGCTTGTCTGGGAAGGCCTGCTGTGGGAGCCGTTTGTACCCTGAACTTAGCGGCAGGGCATGAGCGGTTCCGTTGCGGTCGAGGGCGGAGCGGTCAGCTTTGTGGGCCTGGTCACTACCATCGGAGTAGCGTCGGGGCCTCTGTGGGGGGTCCTGGTCCAGCAGGTTGGAGTAGGAGGCAGCACGCGAGGGTCTGGTGCTGGCGGGGAGCTGGATCTTACGAGGACGCTTCACTgt
>TU22592
CTTGAGAATGAGGTCTCCCTCCTGCAGAGTGCCCTCCTTGGCAGCCAGACCCGTCTCAGTCATGTGTTTGATGAAGATCTGGCTTCCCAACTTCAGTCCATACTCTGAAACAGGAAGGCAACATAAAATTGATATAGTGCAAGCCTTGCATTCACCCATCTATGTCAGACCTGCGATGATGTTTTGAAACCTTTTGTTACGGCGTGGCATAATAAACACGGCGCAAATTCTCTCCTGTTGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGCTGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTGAGTTTCTCCTTACCGTCTGTTAGTTTCTCCTTACCGTCTGTTAGTTTCTCCTTACCGTCTGTTAGTTTCTCCTTACCGTCTGTTTGTTTCTCCTTACCGTCTGTTGTTTCTCCTTACCGTCTGTTGTTTCTCCTTACCATCTGTGAGTTTCTTCTTCAGCAGGGTGGCTTTGATTGGCTTGTCTGGGAAGGCCTGCTGTGGGAGCCGTTTGTACCCTGAACTTAGCGGCAGGGCATGAGCGGTTCCGTTGCGGTCGAGGGCGGAGCGGTCAGCTTTGTGGGCCTGGTCACTACCATCGGAGTAGCGTCGGGGCCTCTGTGGGGGGTCCTGGTCCAGCAGGTTGGAGTAGGAGGCAGCACGCGAGGGTCTGGTGCTGGCGGGGAGCTGGATCTTACGAGGACGCTTCACTgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22591 False 731 lncRNA 0.53 2 20336994 20337850
TU22592 True 795 lncRNA 0.47 2 20336994 20337850

Neighbor

gene id symbol gene type direction distance location
LOC110506010 polr2e coding upstream 15926 20318748 ~ 20321068 (+)
LOC110505394 LOC106573573 coding upstream 136428 20197087 ~ 20200566 (+)
LOC110532018 LOC106573567 coding upstream 243047 19977844 ~ 20093947 (+)
LOC110504002 LOC106573565 coding upstream 430783 19901680 ~ 19906211 (+)
LOC110503939 LOC106573564 coding upstream 471375 19863734 ~ 19865619 (+)
LOC110532051 NA coding downstream 170255 20508105 ~ 20522381 (+)
LOC110506309 hpln4 coding downstream 190435 20528285 ~ 20565572 (+)
borcs8 borcs8 coding downstream 585130 20922980 ~ 20931337 (+)
mef2b mef2b coding downstream 612257 20950107 ~ 20983313 (+)
LOC118945307 NA coding downstream 680357 21003934 ~ 21089252 (+)
G19400 NA non-coding upstream 27096 20309425 ~ 20309898 (+)
G19399 NA non-coding upstream 27611 20309171 ~ 20309383 (+)
G19393 NA non-coding upstream 40916 20295780 ~ 20296078 (+)
G19390 NA non-coding upstream 46523 20290262 ~ 20290471 (+)
G19389 NA non-coding upstream 47960 20288810 ~ 20289034 (+)
G19434 LOC106573581 non-coding downstream 36798 20374648 ~ 20375083 (+)
G19496 NA non-coding downstream 127440 20465290 ~ 20516818 (+)
G19526 NA non-coding downstream 181607 20519457 ~ 20524897 (+)
G19622 NA non-coding downstream 357250 20695100 ~ 20695539 (+)
G19676 NA non-coding downstream 465009 20802859 ~ 20803085 (+)
G19380 LOC100194703 other upstream 60099 20276590 ~ 20276895 (+)
G19359 NA other upstream 94119 20242645 ~ 20242875 (+)
G19083 NA other upstream 421162 19915586 ~ 19915832 (+)
G20773 NA other downstream 1229695 21567545 ~ 21568188 (+)
G23109 NA other downstream 3200546 23538396 ~ 23538863 (+)
G23135 NA other downstream 3236742 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 3535171 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 4166805 24504638 ~ 24506125 (+)

Expression


Co-expression Network