LOC110508592 (LOC106613751)


Basic Information

Item Value
gene id LOC110508592
gene name LOC106613751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21809564 ~ 21911516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589263.2
ATGCAAGGCGAGGAGTCCGCACCTAGTGTTCCTACACGCGCCACAAACTGTGCTCTGTTATGCCAGGGAGATGCTGCTGGCGGTGGCGCCTCAGACTACAGGGCTGAACAGGACTCCACAGGAGCCACAGGAACAGCGCTAACCGGGTTGGCTACTGGTTGGACAGGTGAAGGCATTAACGGTATGATATGCAACAAAAGCGGAGATTGCAGAAGGGACCCCAACATTTCTGGGAGCCTGTCCTCCATCATATTTAGGCAGGAGAAGCAGACAGCAGGAATAGTTGAACCCGACGACGGGAAAAGGCAGTCTAGATGTAATTCAAGAGTCGCCAGCATGGACGGTTCTATTACCTCAGCGGGGTCCTTAGCACAGGGGCAAGGGACCGAGGTGGCCGGGGCAACAACTACTGCCACTGTGAAAAAGGACCCCAGAGTTTCCTTCTCAAATGCCCCTAGTAGAAAAGCATCGTCCTCTGTGCAGAACCAACAGAAGATGAATTCTGTCTCAAGTTTTAAATCTGAGGATATATCCCAGATTGTGACAGATGATGGGGAACCAAATGACAATCGGACATACATGCAGCGGCAATTTAGTTCCATGCTTCAGCCTGGAGTTAATAAATTTTCACTGCGTATGTTTGGGAGCCAAAAAGCTGTTGAAAAGGAACAACAGCGCGTCAAATCGGCCGGTAATTGGATTATTCATCCATACAGCGATTTCAGGTTCTACTGGGATTTCACCATGTTGATGTTCATGGTGGGCAACCTCATCATCATCCCAGTGGGGATCACCTTCTTCAAGGACGAGACCACCGCGCCCTGGATCATCTTCAACGTGGTCTCTGATACCTTCTTCCTCATGGACCTGGTCCTCAACTTCCGCACAGGCATTGTTTTAGAGGACAACACTGAGATCATCCTGGACCCCAAGAAGATCAAGAGGACGTACCTGAAGACCTGGTTTGTGGTGGACTTTATCTCCTCCATCCCTGTTGATTATATCTTCTTGATCGTGGAGAAGGGGATCGACTCTGAGGTGTATAAAACAGCCAGAGCCCTGAGGATCGTGCGCTTTACCAAGATCCTCAGTCTGCTGAGGCTGCTCAGGCTGTCCAGGCTAATTCGCTATGTCCACCAATGGGAAGAGATCTTCCATATGACCTATGACCTGGCCAGTGCAGTGATGCGTATCTTCAACCTGATTGGTATGATGTTGCTGCTGTGTCACTGGGATGGCTGTTTGCAGTTCCTGGTTCCCATGCTGCAGGATTTCCCCCAGGACTGCTGGGTCTCCCTTAACAAGATGGTGAATGACTCGTGGAGCGAGCTGTACTCCTTTGCCCTGTTCAAAGCCATGAGTCACATGCTGTGTATCGGTTATGGGCGCCAAGCCCCAGAGAGCATGTCTGATATCTGGTTGACCATGCTCAGTATGATCGTGGGAGCCACCTGCTACGCCATGTTCATCGGCCACGCTACCGCCCTTATCCAGTCCCTGGACTCATCCCGGCGCCAGTACCAGGAGAAGTACAAACAAGTGGAGCAGTACATGTCTTTCCACAAACTGCCAGCTGACTTCCGACAGAAAATCCATGACTACTACGAGCACAGATACCAGGGCAAGATGTTTGATGAGGAGAGCATCCTGGAGGAGCTTAATGAACCACTGCGGGAGGAAATTGTCAACTTCAACTGCCGTAAGCTGGTGGCGTCCATGCCCCTGTTTGCCAACACCGACCCCAACTTTGTGACGGCTATGTTGACTAAGCTCCGCTTTGAGGTCTTCCAGCCTGGAGATTACATCATCAGGGAGGGCACCATCGGCAAGAAGATGTACTTCACCCAACATGGTGTGACCAGTGTTCTGACCAAAGGAACCATGGGCATGAAGCTCTCAGATGGATCCTATTTTGGAGaGATCTGTCTGTTGACCCGAGGCAGACGGACGGCCAGTGTGCGAGCGGACACGTACTGCCGTCTCTACTCCCTGTCTGTGGATAACTTTAATGAGGTGCTGGAGGAGTACCCCATGATGAGACGAGCCTTCGAGACTGTGGCCATCGACCGACTGGACCGGATAGGGAAGAAGAACTCGATCCTAATGCACAAGGTTCAGCATGACCTCAATTCGGGCGTCTTCAACAACCGGGAGAACGAGATGATCCAGGAGATTGTGAAATATGACCGTGAGATGGTGCAGCAGGTGGACCTGCATAGGCCACGTGCCATGTCCATGTCCAACCCACCCACACATGGCGGCATCTTCACCCCCCCTGGCCCTCCCCAGAGCTCAGCCATCGCCACCCTCCAGCAGGCTGTGGCCATGAGCTTCTGTCCCCCCGTGGTAGGCCCTCTGGCAGGGGGTGGGGGCCTGCAGTCCCCCCGGATGGTGCGGAGGTTCAAGGTGATGCAGAATGTATCCAGCCCAGTGCCAGCCTCCCCTCCCCCCCAGACCCAGCAGACCATGCATCCCCAGCTATACGCCAGTGGTGCATTCGTCGCGGCCCTCTCCAGCCCCCCCATCCAGAGCCCCTTAGCGGCTGGGGGACGGACATTCCAGTACGGGCCCTCTTCTGGCTCCCAGATCTCCCTGGTTCAGAAAGTTGTGCCCAGCCCCACACACAGGCCCAACACCCATAACAGCACCCGGTCTCTGCACATGAGCAGTCTGGGTCAGAATGCCAGGGCACTGTCCGCCTCTCAGCCCTCCCTGCCCCAGGGAGGGGCTCAGCCCGTGGCTCCCTGCCCATCACAGTCCGCCCGTGTCTCCTCCACCTCCATCGGGCCCCCTCAGGCCCCCTCGGGCAATGCAGGGGTCAGGAGCGCTATGACTCATAGGATGGTGCTTCCCCACCAGATGTCTGCAGGGGCGTTCCCTCTAGCCTCCCTCCCGGGGACTGTTACATCGCTGGGGATGGGCATGGGCATGGGAGTGGGCATGGGGACAGGCTTGGCACCAGCCCTGCTGGACTCAGGATTACCCAAGAGTGAGTTTATAGCCAGCCTCCCTGAGACAGACCGTGCTAGATCGAGGCTTTCTTCCAATTTGTGACCTTTATTAGATTCCTGCAGAGCCAGTGCTTTTTGGTTGTGGGAACTCTAGTCGTTTCTTCCTTCTACCCTATAATTCTCCCTGTCAGGCGGGGCTAAATCTGACTTAAATAATGTGTGGTGTGTGACTGGtgatgacagggagagagagacaagagctGATGGAAAATGTATGACTAACAATATGAAGTCTGTATACAGAGTTATTGTCAAAGATGGGATGTTTCTACTCCATCCACAGACAGATACTGACCATACTTAATGGTAGCACCTTGTCCCCACATCTCTTCTCCTTTATTTTCTGTGTTTACTGTAACCATATTCAACATACATAACATCTGTCACCCACTATCTATATACTCCCAACAATACAAACTGGCTGGGACAAGAAGAAAATCTGAGACCTGCTTCAGATGACAACGATGACATTCACACTTTGCAGAAGTGTTCTGAGATTTCCTCTTTTGTCTGTGGACCGGCTTTAGCACAAGTTCTACTCATGCCACCGTAATATTGTTTcagaaaacaagaaaatgctaaatgttatttttttcccACACCACATCTTAAATGAATGCATTCAAAGGCTATAAAGGGAATTGTTtgacatttgtatttttaatcgAGACTTGTACAAACACAATATGGCCTGGGATTAGTAATATATCACTGAAGAAAAGAAAACGATGATTGTAACATTTGAAGCCATGCACTTGGTCCATAAGTGTGTGTATGGGTATAAGTATGACTGAGTTTCTTCATAGGAAATTCATATAATATATaactcatcccccctctctcaaaTGATCTTTGCAGAAGATGGTGGAGGtatgtttaattttttttgctATGGAATCTACCATATCATACATGACGTTCCATTCTGACTTTGCCTTTTCAAAACACTACAGCTTGGGATTAAGTGATACAGTTTCAATGAGGTCATCCGTCCCCATAGGATGATGCGTATGCATGTTGATATGGGTTATGAGTCACATGAATATCAACATACTGTAAATCAACATACTGTATTTCAATAAACCCTGATGGAATTTCA

Function

NR:

description
LOW QUALITY PROTEIN: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589263.2 True 4110 mRNA 0.51 9 21809564 21911516

Neighbor

gene id symbol gene type direction distance location
LOC110508526 bsg coding upstream 6661 21792456 ~ 21802903 (+)
LOC110508358 LOC106573608 coding upstream 24320 21779741 ~ 21785244 (+)
LOC110508215 LOC106573607 coding upstream 62375 21733594 ~ 21747189 (+)
LOC110507802 LOC106573603 coding upstream 178270 21605024 ~ 21631294 (+)
LOC110512702 LOC106573599 coding upstream 453706 21353302 ~ 21355858 (+)
LOC110508655 LOC100380741 coding downstream 113113 22024629 ~ 22107857 (+)
LOC110508905 twf1 coding downstream 300816 22212332 ~ 22226104 (+)
LOC110532091 LOC106573613 coding downstream 369573 22281089 ~ 22422282 (+)
zgc:110339 LOC106573615 coding downstream 520794 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 709150 22620666 ~ 22623478 (+)
G20848 NA non-coding upstream 44377 21759701 ~ 21765187 (+)
G20810 NA non-coding upstream 110279 21694253 ~ 21699285 (+)
G20800 NA non-coding upstream 125266 21683395 ~ 21684298 (+)
G20799 NA non-coding upstream 172203 21635497 ~ 21637361 (+)
G20783 LOC106613744 non-coding upstream 205164 21587199 ~ 21604400 (+)
G21203 NA non-coding downstream 27607 21939123 ~ 21939329 (+)
G21210 NA non-coding downstream 36672 21948188 ~ 21948544 (+)
G21214 NA non-coding downstream 41015 21952531 ~ 21952872 (+)
G21229 NA non-coding downstream 51423 21962939 ~ 21963157 (+)
G21299 NA non-coding downstream 140569 22052085 ~ 22052352 (+)
G20773 NA other upstream 241376 21567545 ~ 21568188 (+)
G19400 NA other upstream 1499666 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1532669 20276590 ~ 20276895 (+)
G19359 NA other upstream 1566689 20242645 ~ 20242875 (+)
G19083 NA other upstream 1893732 19915586 ~ 19915832 (+)
G23109 NA other downstream 1626880 23538396 ~ 23538863 (+)
G23135 NA other downstream 1663076 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 1961505 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2593139 24504638 ~ 24506125 (+)
G24123 NA other downstream 2639009 24550525 ~ 24552435 (+)

Expression


Co-expression Network