RNA id: TU24326


Basic Information

Item Value
RNA id TU24326
length 540
lncRNA type intronic
GC content 0.40
exon number 2
gene id G20880
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21831910 ~ 21832960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAACTTTTGTTTAGTCTGGACAATATTGCAAAACATGTTGATGCTTTCAGTAGCACTGAAGGTGTTGACTCATACTGCTTTTTCTATTCTTTGCATGGGCGAACGGGATGGATGCCACACACCAATAACTCAAGCTGAACTGGAAGAGGTGGCTGCAGCTATGGTCCATGTTGTATCTACAATTGTCTCCCTACTGACAGGACAATACATACACTGTTTTGAAGGATCCTGCCCAACCCAAATGCTTCAAGTGGCACAATTACgacaatgacccaacacacctccaggctgtgtaagtgctatttaacgaagaaggagagtgatggagtgctgcatcagacgacctggcctccacaattacccgacATCAACCCAATTTAGAtagtttgggataagttggaccgcagagtgatggaatagcagccaacaagtgctcagctggttgagagaatgctgagtgtgcaaagctgtcatcaaggcaaagcgtggctacaataaagaatgtatatataacattataacatatatttagatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24293 lncRNA upstream 66723 21762239 ~ 21765187 (+) True G20848
TU24292 lncRNA upstream 69476 21759701 ~ 21762434 (+) False G20848
TU24247 lncRNA upstream 132625 21694253 ~ 21699285 (+) True G20810
TU24237 lncRNA upstream 147612 21683395 ~ 21684298 (+) True G20800
TU24236 lncRNA upstream 194549 21635497 ~ 21637361 (+) True G20799
TU24369 lncRNA downstream 53669 21886629 ~ 21887084 (+) True G20920
TU24688 lncRNA downstream 106163 21939123 ~ 21939329 (+) True G21203
TU24695 lncRNA downstream 115228 21948188 ~ 21948544 (+) True G21210
TU24699 lncRNA downstream 119571 21952531 ~ 21952872 (+) True G21214
TU24715 lncRNA downstream 129979 21962939 ~ 21963157 (+) True G21229
XR_005041163.1 mRNA upstream 4781 21819189 ~ 21827129 (+) True LOC118946025
XM_036969779.1 mRNA upstream 29007 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA upstream 29007 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA upstream 29007 21793376 ~ 21802903 (+) True LOC110508526
XM_021588935.2 mRNA upstream 46666 21779741 ~ 21785244 (+) False LOC110508358
XM_021589385.2 mRNA downstream 191669 22024629 ~ 22107857 (+) False LOC110508655
XM_036970165.1 mRNA downstream 191686 22024646 ~ 22107857 (+) True LOC110508655
XM_021589846.2 mRNA downstream 379372 22212332 ~ 22226104 (+) True LOC110508905
XM_036970373.1 mRNA downstream 448129 22281089 ~ 22422282 (+) True LOC110532091
XM_021590144.2 mRNA downstream 599350 22432310 ~ 22435150 (+) False zgc:110339
TU24207 other upstream 263722 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1522012 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1555015 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1589035 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 1916078 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1705436 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1741632 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 2040061 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 2040061 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2671695 24504655 ~ 24506116 (+) True ccl4

Expression Profile