G21533


Basic Information

Item Value
gene id G21533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22249351 ~ 22249637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU25042
gatcctgactagtctcccagcccctgccgctgaaaaacatccccacagcaagatgctgccaccaccatgcttcaccttagggatggttccagatttcctccagatgtgacgcttggcattcaggccaaagagttcaatattggtttcatcagaccagagaatcttgtttctcatggtctgcgagtccttacgtgcattttggcaaactccaagcgggctgtcatgtgccttttactgaggagtggcttccgtctggagacaatcaggttcttggtcacctccctgac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25042 True 287 lncRNA 0.37 1 22249351 22249637

Neighbor

gene id symbol gene type direction distance location
LOC110508905 twf1 coding upstream 23247 22212332 ~ 22226104 (+)
LOC110508655 LOC100380741 coding upstream 141494 22024629 ~ 22107857 (+)
LOC110508592 LOC106613751 coding upstream 337835 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding upstream 422222 21819189 ~ 21827129 (+)
LOC110508526 bsg coding upstream 446448 21792456 ~ 21802903 (+)
LOC110532091 LOC106573613 coding downstream 31452 22281089 ~ 22422282 (+)
zgc:110339 LOC106573615 coding downstream 182673 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 371029 22620666 ~ 22623478 (+)
LOC110510174 LOC106573623 coding downstream 464037 22713674 ~ 22869379 (+)
LOC110511054 NA coding downstream 1537856 23787493 ~ 23793379 (+)
G21528 NA non-coding upstream 5636 22239891 ~ 22243715 (+)
G21299 NA non-coding upstream 196999 22052085 ~ 22052352 (+)
G21229 NA non-coding upstream 286194 21962939 ~ 21963157 (+)
G21214 NA non-coding upstream 296479 21952531 ~ 21952872 (+)
G21210 NA non-coding upstream 300807 21948188 ~ 21948544 (+)
G21545 NA non-coding downstream 18118 22267755 ~ 22267975 (+)
G21573 NA non-coding downstream 66854 22316491 ~ 22316704 (+)
G21578 NA non-coding downstream 76793 22326430 ~ 22326650 (+)
G21580 NA non-coding downstream 79315 22328952 ~ 22329228 (+)
G21598 NA non-coding downstream 107205 22356842 ~ 22357072 (+)
G20773 NA other upstream 681163 21567545 ~ 21568188 (+)
G19400 NA other upstream 1939453 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1972456 20276590 ~ 20276895 (+)
G19359 NA other upstream 2006476 20242645 ~ 20242875 (+)
G19083 NA other upstream 2333519 19915586 ~ 19915832 (+)
G23109 NA other downstream 1288759 23538396 ~ 23538863 (+)
G23135 NA other downstream 1324955 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 1623384 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2255018 24504638 ~ 24506125 (+)
G24123 NA other downstream 2300888 24550525 ~ 24552435 (+)

Expression


Co-expression Network