RNA id: TU62841


Basic Information

Item Value
RNA id TU62841
length 211
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G56487
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51518735 ~ 51555869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgccttttgcacacaatgtatatagactctctttttttctactgtgttattgacttgttaattgtttactccatgtgtaactatgtgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactagcctacctggttaaataaaggggaaaaaaaaaaaaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62828 lncRNA upstream 18292 51500205 ~ 51500443 (+) True G56475
TU62808 lncRNA upstream 44814 51473696 ~ 51473921 (+) True G56455
TU62766 lncRNA upstream 75564 51442964 ~ 51443171 (+) True G56415
TU62495 lncRNA upstream 176475 51333433 ~ 51342260 (+) False shank2b
TU62494 lncRNA upstream 177808 51339067 ~ 51340927 (+) True shank2b
TU62910 lncRNA downstream 51745 51607614 ~ 51607991 (+) True G56554
TU62896 lncRNA downstream 117706 51673575 ~ 51674734 (+) True G56541
TU63201 lncRNA downstream 208912 51764781 ~ 51764994 (+) True G56835
TU63228 lncRNA downstream 230587 51786456 ~ 51786792 (+) True G56860
TU63229 lncRNA downstream 230967 51786836 ~ 51787037 (+) True G56861
XM_021604390.2 mRNA upstream 59938 51455131 ~ 51458797 (+) True LOC110524584
XM_021604377.2 mRNA upstream 67275 51449353 ~ 51451460 (+) False LOC110524575
XM_036979582.1 mRNA upstream 94432 51371941 ~ 51424303 (+) False LOC110524569
trnap-ugg-2 mRNA downstream 74299 51630168 ~ 51630239 (+) True trnap-ugg-2
trnap-agg mRNA downstream 74963 51630832 ~ 51630903 (+) True trnap-agg
XM_021604437.2 mRNA downstream 246128 51801997 ~ 51851775 (+) False LOC110524604
XM_036979638.1 mRNA downstream 259468 51815337 ~ 51851775 (+) False LOC110524604
XM_021604428.2 mRNA downstream 271989 51827858 ~ 51851775 (+) False LOC110524604
TU62774 other upstream 67800 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 1434739 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2624823 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 3135478 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3493777 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 2110346 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2432271 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2488980 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3165319 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 4349639 55905508 ~ 55923376 (+) True G61202

Expression Profile