RNA id: TU66280


Basic Information

Item Value
RNA id TU66280
length 250
lncRNA type intronic
GC content 0.43
exon number 1
gene id G59644
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54136738 ~ 54136987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatagagagctgtttaatCTCTATGTTGGTTGcggcgtgatagtgactagggtgggtcatctaggtgattaatggtttatgtgggcctggtatggttcccaatcagagacagctgtttatcgttgtctctgattggggatcatatttaggtagccatttcctaatttgtgatttgtgggatcttgtctacagttagttgcctgtgtgcacaccagtagcttGACCTTTCATTTGTGCTTTATTGTCTtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66275 lncRNA downstream 4242 54132228 ~ 54132496 (-) True G59639
TU66274 lncRNA downstream 4658 54131862 ~ 54132080 (-) True G59638
TU66272 lncRNA downstream 5962 54130334 ~ 54130776 (-) True G59636
TU66265 lncRNA downstream 13872 54122525 ~ 54122866 (-) True G59630
TU66263 lncRNA downstream 16105 54120321 ~ 54120633 (-) True G59628
TU66283 lncRNA upstream 5379 54142366 ~ 54142905 (-) True G59647
TU66286 lncRNA upstream 8789 54145776 ~ 54146158 (-) True G59650
TU66291 lncRNA upstream 16832 54153819 ~ 54154023 (-) True G59655
TU66292 lncRNA upstream 17143 54154130 ~ 54154415 (-) True G59656
TU66296 lncRNA upstream 21431 54158418 ~ 54158638 (-) True G59660
XM_021605344.2 mRNA downstream 117188 53989527 ~ 54019550 (-) True LOC110525320
XR_005051434.1 mRNA downstream 262502 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 262713 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 262713 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 268648 53853860 ~ 53868090 (-) True LOC110525263
XR_005052162.1 mRNA upstream 54993 54191980 ~ 54223870 (-) False LOC110525336
XM_021605396.2 mRNA upstream 171063 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA upstream 171063 54308050 ~ 54354009 (-) False LOC110525355
XM_021605410.2 mRNA upstream 171063 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA upstream 176788 54313775 ~ 54354010 (-) True LOC110525355
TU65545 other downstream 339724 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 373842 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 547968 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 710422 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 798351 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 592144 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 933405 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1013254 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1056310 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1066430 55203417 ~ 55203742 (-) True G60624

Expression Profile