RNA id: TU115193


Basic Information

Item Value
RNA id TU115193
length 209
lncRNA type intronic
GC content 0.38
exon number 2
gene id G102914
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94542044 ~ 94546671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctatcagcatcaacgtcatcacaggtcagtcccctgtccccctacaccagtctctatcagcatcaacgtcatcacaggtcagtcccctgtccccgtACACAATAGTCtttatcctgacatcaacgtcatcacaggtcagtcccctgtccccctacaccagtctctatcagcatcaacgtcatcacaggtcagtcccctgtccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115207 lncRNA upstream 28613 94513105 ~ 94513431 (+) True G102928
TU115206 lncRNA upstream 30889 94510637 ~ 94511155 (+) True G102927
TU115174 lncRNA upstream 58964 94478321 ~ 94483080 (+) False G102907
TU115176 lncRNA upstream 59384 94478321 ~ 94482660 (+) True G102907
TU115172 lncRNA upstream 71531 94469989 ~ 94470513 (+) True G102906
TU115228 lncRNA downstream 8749 94555420 ~ 94556443 (+) True G102937
TU115318 lncRNA downstream 30573 94577244 ~ 94578590 (+) True G102999
TU115307 lncRNA downstream 35920 94582591 ~ 94585584 (+) True G102988
TU115310 lncRNA downstream 37801 94584472 ~ 94587834 (+) True G102991
TU115327 lncRNA downstream 86153 94632824 ~ 94634350 (+) True G103007
XM_021617149.2 mRNA upstream 195929 94341947 ~ 94346115 (+) False LOC110533014
XM_036988999.1 mRNA upstream 195929 94342868 ~ 94346115 (+) False LOC110533014
XM_036989014.1 mRNA upstream 195930 94342871 ~ 94346114 (+) True LOC110533014
XM_036988986.1 mRNA upstream 263469 94273861 ~ 94278575 (+) False LOC118936691
XM_036988993.1 mRNA upstream 263469 94273861 ~ 94278575 (+) True LOC118936691
XM_036989146.1 mRNA downstream 19337 94566008 ~ 94639453 (+) True LOC110519363
XR_005053416.1 mRNA downstream 94550 94641221 ~ 94642172 (+) True LOC118966139
XM_036989163.1 mRNA downstream 96022 94642693 ~ 94715672 (+) False LOC110499554
XM_036989175.1 mRNA downstream 96022 94642693 ~ 94715672 (+) False LOC110499554
XM_036989168.1 mRNA downstream 96157 94642828 ~ 94715672 (+) False LOC110499554
TU115185 other upstream 19747 94488682 ~ 94522297 (+) True G102912
TU114956 other upstream 148729 94314693 ~ 94393315 (+) True G102769
TU114889 other upstream 294113 94245497 ~ 94247931 (+) False G102740
TU115224 other downstream 8393 94555064 ~ 94556189 (+) False G102936
TU115225 other downstream 8393 94555064 ~ 94556189 (+) False G102936
TU115226 other downstream 8393 94555064 ~ 94556189 (+) False G102936
TU115227 other downstream 8393 94555064 ~ 94556189 (+) True G102936
TU115442 other downstream 219503 94766174 ~ 94766557 (+) True G103091

Expression Profile