RNA id: XM_036938228.1


Basic Information

Item Value
RNA id XM_036938228.1
length 5966
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110525147
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12813650 ~ 12890396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGACCCGTCTTTTGATCAGCTCAGAACGGAAGAAGGTGGGACGCGACGGAAAAGTAAATTAAAGAAGGATTTCTCGAGGGGGTGGGCATGTTGAAGAGaaataatgttttgttgacatttgaCCAGGACAGACGGCATTACAGTTATTAAACGGTACGTTAACAACACTTGAAGACGGACAGAACAAGGATCCTCAGAGACTCAGGAAAGGACTGACGAGAACCACCATGGCTTAAACCCTGTGTTCCCCACTAgacccctgacccccccccccccccccctccagtctctcccggcctccctaaccctgtccatGTGAGGGGTTGGGCAGCGCCCCCCTGTCCCCCCCCGAATCCCTCTGGAGCCATGATGAACCTCCAGAAGCACCAAACCATGGGCTCTGACCGGGACCTTCAGTCCTCCTCCTCAGTCAGCCTGCCCTCCGTCAAGAAGGCCCCCAAGAAGAGACGTCTGTCCATGGGGAACCTGTTCAGACGGCGCCGAGACCCCAAGAGGAAGTCCATGGAGCTCCATGGAGAAGGAGGGGTGGATGGTATCGCCAGCATAGACAGCATCCACTCAGACCTCACGCTGAATGATAAGAACTCTGCCTTCTCAGTGGCCGGAGCTGCCTGCACCTCCTCCCTCGGggcgtcctcctcctcctcctcctcctcctcttcctcccggGGTCGAGAGCTGCTGGAGTGCCCTCTGTGCCTTCTACGTCACTCTAGGGACAGTTTCCCGGACATCATGACCTGCCACCACCGCTCCTGTGCGGATTGCCTGCGCCAGTACTTGCGAATAGAGATCAGTGAGTCGCGCGTCAACATCAGCTGTCCAGAGTGCTCTGAGCGGTTCAATCCCCACGACATACGCATCATCCTGGGAGACCAGCCCCTCATGGAGAAGTACGAGGAGTTCATGTTGAGACGATGGCTGGTGACCGACCCTGACTGTCGCTGGTGCCCCGCCCCAGACTGTGGGTATGCAGTCATTGCCTTTGGCTGTGCCAGCTGTCCTAAGATCACGTGTGGACGTGAGGGGTGTGGCACGGAGTTCTGTTACCACTGTAAGCAGCTGTGGCACCCCAACCAGACGTGTGATGCGGCCCGGCAGCAGAGAGCCCAGAGCCTGAGGCTACGTACCTTCAGCTCCTCGTCTCTTAGCTACAGCCAGGAGAGTGGTGCTGcagCCGATGACATCAAGCCCTGTCCGCGCTGCGCTGCTTACATCATCAAGATGAACGACGGCAGTTGTAACCACATGACCTGCGCCGTCTGTGGCTGTGAGTTCTGCTGGCTCTGCATGAAGGAGATCTCTGACCTGCACTACCTGAGCCCGTCAGGATGTACCTTCTGGGGCAGGAAGCCGTGGAGCAGGAAGAAGAAGATTCTGTGGCAGCTGGGCACGCTGGTGGGCGCTCCGGTGGGCATCGCTCTGATCGCTGGCATCGCCGTCCCCGCCATGATCATAGGCATCCCTGTGTACGTGGGGAGGAAGatcTATAACCGCTATGAGGGGAAGGACATCTCTCCTCACAGGAGGAACCTGGTGATAGTAggaggagtcactctgtctgtcatcaTGTCTCCTGTGGTGGCAGCCGTCTCTGTCGgCATCGGCGTGCCCATCATGCTGGCGTACGTGTACGGCGTGGTGCCCATCTCTCTGTGTCGCAGCGGGGGCTGTGGCGTCTCCACTGGTAATGGGAAAGGAGTCCGCATCGAGTTCGATGACGAGAACCAGATGACCGCAGGGAGTGGGGCGCAAGCTACTGaCACGACCTCTGTGGCGGACACCAGGAACAACCCCAGCATCGGAGAAGGTAGCGTGGGGGGCATGACGGGCAGTCTGAGTGCCAGCGGGAGCCACGTGGACCGGATGGGCGCCATGAGGGACAACCTGAGTGAGAACGCCTCCACCATGGCCCTGGCTGGGGCCAGCATCACCGGATCTCTGTCTGGCAGCGCCATGGTCAACTACCTGAACAGGTTGGAGGTCCAGGCTGATGTTCAGAAGGAGAGGTGTAGTCTGAGTGGAGAGTCGGCCACCTTCAGCTTGGGGACCATCAGTGACAACGCTAGCACCAAAGCAATGGCTGGATCCCTTCTCAACTACAGAGACGGGACCAGTATGGAGGTGCAGGTGGACATAGAGCCGGGTAAGTCCGCTGGTCAACTACACGACCACGCTATGGATGATGGGAGAGACGCTGGGCGCTGTGGCTGGTCCTGCCACTCTGGATGCCCCTCAGAGGGCCAGGATGGCACCGCcaagtcctcctcctcttcctcgggGAAGAAGAGTAAAAGCAAGCTGAAGAAGGGAGGAGGCTGTAAGATCCAGGAGACGAGGGAGGATATGGACGCTCGTCTCCTTGAGCAGCAGAGCACCAACTCCTCAGAGTTTGACTCTCCCTACCTCAGCGGCTCTCTGCCCTCCGTAGCCGACTCTCACTCCTCCCACTTGTCAGAGTTCAGCGGCGGCTCTGACCTGGAGATCACGAAGACGTCCTGCAGCCACGGATCCTCGTCTGACTACCACAGCCGCTTCGCCACAGTCAGCCCTCTGCCTGAAGTAGAGGGAGACCGGCTGGAGGCGTTACCCTCACCCCGAGGTGTCCTCTCCCAGCCTCACTCCCCGGTCTCTTCGCCCTGTCCCGAGGTGTCCGTCTCCCCGAGGTGTCTGATAGCAGAGGAAAACATCAACCAGGTGTGTCCTACGAAGGCAGATTGTGACTGTATTACAGGAGGAGCCCTTCCCGTtggacagctgctgcaggagaaCAACAACAACCTGCAGGCCCGTCCCTCCAGCCTGTTCCAGACCTCCTGTATTCAGACTGACATCTGACCTAAAAACACCAGTTTTTGGTTTCACAGAataattttttttctttcttccccAGAAGACAAAAGCTTTGAATGGACATTTCTGTCGTCCAGAAGTGTGGAGAAACCTCAGCTCAGTCAGTAGGACTTGTTTTAATAACAGCAAGGTGAAGGCTGTTGTTTCCTGTCATGTGACCCCTATTGCAGTGTTCCGACTGGCTGCTGTCCCGCCTCACAAGCAGGAGTGAAAGAGACCCGTCACTGACCCCCAGGCGGACTGTCAGTCAAGCTGGGGATCAGGACGCAACGTTCAGGAACCTTCAAGCTCTCAAAACGCCAAGTTGAACTTTAATATGAACCAGGCAATACTATCCTTCGTGTTCTCTTCAGTTTTAAAATGAGTTTATAATTAAGCCACTTCTGTTAAGTGATGATTTGTACTTATTATAATTCGATACTAGTCCGCTGGAAGGAATTTAAAAGCCTGGTAGTAGTTTATCTACGGCTAGCTGAGAGGGACAAACCATTCTATCTACGGCTAGCTGAGAGGGACAAAGTACTGGAGCAGAGTACTGTTGCTAGGTAGAAGTAGAGCTGGGTCTCTGGAAGGCCATGGTTTAAACATCCCGAAGATGGATGAATCACGCTGAGGGTTAATTATAATAGCCACAACCCACCAATGAGAGAGTCACttccttgaaattgtttaacaaATATTTTTCAACCGTCAGTAAAATAAaattgtgcttttttttttttttcaggctGAAGAATCTTTCACCTCACATAATAAGATAACTTTCATATCTGTTATAACCAAtggtttatatatacactagatgactgacagggggcgctgtgttgaagccaccgtgccAAAACAATGTTTTGGAAGCTaaagaaatgtatttattaattggttttaacaacatgtattccattacagacaccttaatatTTTTACATTATATAATGTGAGCTAAAcgtacaaataaaataatatataacaTTTTCCTTTTTAGATtcatgttactgtccccactaaaacaaaaaaaacatttgattgaaacactgtagaattccattcattcctatggaggccTGCTCCTAATGGAGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACAACATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatctcaatggccaatacataacATCAGTAATCCATCCCCTACTGGGGAGAGCCAATATGGccaaccggtggcttcaaagcatctcaatggccaatacataacATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccgatGGCTTCAAAGcatctcaatggccaatacataacATCAGTAATCCATCCCCTACTGGGGagagccaatatggccgaccggtggcttcaaagcatcTCAATGGCCAACACATAACATCAaaaatccagggtttatatacgtTGGTTATTACTCATTGTGCCTTTTTGAAAAGGAAAAGCTGTTTTTCCTCTTTCTAATCGTCTGCATCTCTCCACCTCCTTCTAGACTTTAAAAAGCTAAAACAACAGATGTCAGATGGTCTCTCTCGACCATGCCAGGAGAGATACTAGACGAGTAGGGCTTCATAATACTGTGGTAGACTTTACACGTCTTGTTCAATTGCCTACCAAAGACAGCACTCAGGCTCTTGAGAACTCTTGTTCCTGGTAACCCTTGACGACGTCTGTTTTGTCATCCCCCAGACTACTCCACCTGGTGCAGCATGTCTACACCATGTGGTTAAACATGTCAAAATaaacacaggaatatatacaggctgcttgtttgttgttgttgtctaatACGCTTTACAAATGCTACGCAAATAACAGGAGGCCAGAGTCTCCTGCTGTTAACCAGACTGGTTCCATAAATGTACTGCAATGCTCAGAGTGTATGTACGGGGATATCATCAGTTGACCCCTATTCCTGTCTGTGTCTCAAATGACAGTCTATTCCCCGACACAGTGCACAGGTAGTGTACTATCTAGAGAGTAGTGTGCCATCAGGGCCGCATGGCGTCTGTTCCGTGTCTCCTGCCGGTCTGTGAAGACatgtggctgaatgatgacatctctggactgatttaaatgctgctgcctctcctcccctcacacaCGTTGTCTGTGTTTATTCCCTGATTCATTCTCTGCACTGTCCATTTCCTGTTGGTTTAATTCTCTGCACTGTCCATTTCCTGTTGGTTTAATTCTCTGCCCTGTCCATTTCCTGTTGGTTTAATTCTCTGCACTGTCCATTTCCTGTTGGTGTAATTCTCTGCACTGTCCATTTCCTGTTGGTTTAATTCTCTGCCCTGTCCATTTCCTGTTGGTTTAATTCTCTGCCCTGTCCATTTCCTGTTGGTTTAATTCTCTGCCCTTCCCATTTCCTTTCCTATACTTTAAACACTAGTGCCAGTTAGATTTTCTAATTTGTGCAGAATGACATTATCCTGTCCCCAGATCTGTGTTTGATGTGGTAATGACCAAAGGAGATggacagaggacacacacagatctgggaccaggctagaatgGCATTTAAAGGTATCTGTATATTAGTTTGCTAATTTCCTTTTACAATGTGTGTAAAATGCAtatctaaaaaaataaatatctcTTAAACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131359 lncRNA downstream 2490 12810849 ~ 12811160 (-) True G114477
TU131339 lncRNA downstream 50669 12762217 ~ 12762981 (-) True G114459
TU131333 lncRNA downstream 59810 12752747 ~ 12753840 (-) True G114454
TU131328 lncRNA downstream 64600 12747829 ~ 12749050 (-) True G114450
TU131321 lncRNA downstream 73891 12739242 ~ 12739759 (-) True G114443
TU131390 lncRNA upstream 27946 12918342 ~ 12919001 (-) True G114497
TU131398 lncRNA upstream 47147 12937543 ~ 12937830 (-) True G114502
TU131408 lncRNA upstream 53089 12943485 ~ 12961942 (-) True G114506
TU131412 lncRNA upstream 97549 12987945 ~ 12988251 (-) True G114510
TU131413 lncRNA upstream 98024 12988420 ~ 12988629 (-) True G114511
XM_036938172.1 mRNA downstream 98040 12683093 ~ 12715610 (-) False LOC118937723
XM_036938186.1 mRNA downstream 98040 12683093 ~ 12715610 (-) False LOC118937723
XR_005035118.1 mRNA downstream 98040 12683093 ~ 12715610 (-) True LOC118937723
XM_036938190.1 mRNA downstream 129875 12683058 ~ 12683775 (-) True LOC118937724
XM_036938159.1 mRNA downstream 139776 12639702 ~ 12673874 (-) False pop1
XM_036938238.1 mRNA upstream 34076 12924472 ~ 12934534 (-) False pabpc1a
XM_036938245.1 mRNA upstream 34076 12924472 ~ 12934534 (-) True pabpc1a
XR_005039490.1 mRNA upstream 34961 12925357 ~ 12925439 (-) True LOC118944179
XM_036938255.1 mRNA upstream 172694 13063090 ~ 13083743 (-) True LOC110507522
XM_036938296.1 mRNA upstream 195773 13086169 ~ 13093633 (-) False LOC110507534
TU131319 other downstream 74493 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 104335 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 199970 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 228510 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 1154982 11626535 ~ 11658668 (-) True LOC110513475
TU131498 other upstream 201696 13092092 ~ 13093765 (-) True LOC110507534
TU131755 other upstream 405437 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 440352 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 440352 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 440352 13330748 ~ 13332506 (-) True G114812

Expression Profile