RNA id: TU131328


Basic Information

Item Value
RNA id TU131328
length 513
lncRNA type intronic
GC content 0.42
exon number 3
gene id G114450
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12747829 ~ 12749050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacagacattattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacattatTACACAGGTCCTCAGGACTGTCCAGTCCTATcaaccagacacagagacattattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacattattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacattattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacagacattaTTACACAGgtcctcaggactgtccaatcctatcaaccagacacagagacattattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacattattacacaggtcctcaggactgtccaatcctatcaaccagacacagagacattatTACACAGGTCCTCAGGACTGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131321 lncRNA downstream 8070 12739242 ~ 12739759 (-) True G114443
TU131312 lncRNA downstream 22454 12723832 ~ 12725375 (-) True G114436
TU131311 lncRNA downstream 23107 12723462 ~ 12724722 (-) True G114435
TU131309 lncRNA downstream 29069 12718299 ~ 12718760 (-) True G114433
TU131267 lncRNA downstream 63918 12682779 ~ 12683911 (-) False G114409
TU131333 lncRNA upstream 3697 12752747 ~ 12753840 (-) True G114454
TU131339 lncRNA upstream 13167 12762217 ~ 12762981 (-) True G114459
TU131359 lncRNA upstream 61799 12810849 ~ 12811160 (-) True G114477
TU131345 lncRNA upstream 64619 12813669 ~ 12815861 (-) False LOC110525147
TU131346 lncRNA upstream 64619 12813669 ~ 12815861 (-) False LOC110525147
XM_036938172.1 mRNA downstream 32219 12683093 ~ 12715610 (-) False LOC118937723
XM_036938186.1 mRNA downstream 32219 12683093 ~ 12715610 (-) False LOC118937723
XR_005035118.1 mRNA downstream 32219 12683093 ~ 12715610 (-) True LOC118937723
XM_036938190.1 mRNA downstream 64054 12683058 ~ 12683775 (-) True LOC118937724
XM_036938159.1 mRNA downstream 73955 12639702 ~ 12673874 (-) False pop1
XM_036938224.1 mRNA upstream 64600 12813650 ~ 12890396 (-) False LOC110525147
XM_036938228.1 mRNA upstream 64600 12813650 ~ 12890396 (-) False LOC110525147
XM_036938238.1 mRNA upstream 175422 12924472 ~ 12934534 (-) False pabpc1a
XM_036938245.1 mRNA upstream 175422 12924472 ~ 12934534 (-) True pabpc1a
XR_005039490.1 mRNA upstream 176307 12925357 ~ 12925439 (-) True LOC118944179
TU131319 other downstream 8672 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 38514 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 134149 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 162689 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 1089161 11626535 ~ 11658668 (-) True LOC110513475
TU131498 other upstream 343042 13092092 ~ 13093765 (-) True LOC110507534
TU131755 other upstream 546783 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 581698 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 581698 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 581698 13330748 ~ 13332506 (-) True G114812

Expression Profile